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28 Open 9 Closed
28 Open 9 Closed
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Issues list

Add SeqWho as alignment-free FastQScreen alternative enhancement New feature or request
#62 opened Oct 29, 2024 by MatthiasZepper
Speed up nf-test CI by excluding modules enhancement New feature or request good first issue Good for newcomers
#61 opened Oct 29, 2024 by kedhammar
Add relative sample size input in subsampling enhancement New feature or request
#60 opened Oct 29, 2024 by nggvs
Add a paired-end test enhancement New feature or request
#55 opened Oct 29, 2024 by nggvs
Upstream FastQ-screen changes to modules
#54 opened Oct 29, 2024 by edmundmiller
3 tasks
Essential functionality
@FranBonath
Magmap release enhancement New feature or request
#45 opened Oct 28, 2024 by danilodileo
@erickdelgadillo @danilodileo
add kraken2 to seqinspector
#44 opened Oct 28, 2024 by FranBonath
1
@ctuni
1
make a module for sylph
#43 opened Oct 28, 2024 by FranBonath
@jiahang1234
add bbtools to seqinspector
#42 opened Oct 28, 2024 by FranBonath
add clumpify to seqinspector
#41 opened Oct 28, 2024 by FranBonath
@erkutilaslan
add SeqKit to seqinspector
#40 opened Oct 28, 2024 by FranBonath
@sarahjeeeze
add SeqFu to Seqinspector
#39 opened Oct 28, 2024 by FranBonath
1
@ctuni
add BBMap to seqinspector
#38 opened Oct 28, 2024 by FranBonath
1
add seqqc to seqinspector
#37 opened Oct 28, 2024 by FranBonath
MultiQC output
#36 opened Oct 25, 2024 by FranBonath
@matrulda @erkutilaslan
@FranBonath @mikailbala
1
take care of the open PR by Mahesh
#34 opened Oct 25, 2024 by FranBonath
@FranBonath
add support for long reads (PacBio and/or ONT)
#33 opened Oct 25, 2024 by FranBonath
@kedhammar
1
enable selection of tools
#32 opened Oct 25, 2024 by FranBonath
@Aratz @MatthiasZepper
2
Add FQlint module enhancement New feature or request
#31 opened Oct 21, 2024 by MatthiasZepper
@erkutilaslan
New subworkflow and module to assess polyG error in NovaSeq X Plus data enhancement New feature or request
#29 opened Oct 21, 2024 by MatthiasZepper
@anfarr
add preseq to nf-core/seqinspector
#27 opened Oct 21, 2024 by FranBonath
@ctuni
1
Seqinspector fastqscreen - change to iGenome input
#21 opened Aug 28, 2024 by FranBonath
@FranBonath
Input description in documentation needs to be updated enhancement New feature or request
#12 opened Mar 22, 2024 by Aratz Essential functionality
Add larger test data enhancement New feature or request
#10 opened Mar 19, 2024 by alneberg Essential functionality
@KarNair
Add modules outlined in the pipeline proposal enhancement New feature or request
#8 opened Mar 19, 2024 by kedhammar
2 of 17 tasks
6
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