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Add support for generating mag samplesheet #544

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Add support for generating mag samplesheet #544

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Commits on Oct 10, 2024

  1. Add chaining samplesheet with mag

    @sofstam
    sofstam committed Oct 10, 2024
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Commits on Oct 14, 2024

  1. Filter out correctly

    @sofstam
    sofstam committed Oct 14, 2024
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  2. Rename parameters

    @sofstam
    sofstam committed Oct 14, 2024
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  3. Fix linting

    @sofstam
    sofstam committed Oct 14, 2024
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  4. Fix linting

    @sofstam
    sofstam committed Oct 14, 2024
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  5. Use same schema as createtaxdb

    @sofstam
    sofstam committed Oct 14, 2024
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  6. Use correct name of argument

    @sofstam
    sofstam committed Oct 14, 2024
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  7. Add function

    @sofstam
    sofstam committed Oct 14, 2024
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  8. Update nextflow_schema.json

    @sofstam
    sofstam committed Oct 14, 2024
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  9. Apply review suggestions

    @sofstam
    sofstam committed Oct 14, 2024
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  10. Update docs/output.md 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @sofstam @jfy133
    sofstam and jfy133 authored Oct 14, 2024
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  11. Review suggestions

    @sofstam
    sofstam committed Oct 14, 2024
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  12. Merge branch 'generate-samplesheet' of https://github.com/sofstam/tax… 

    …profiler into generate-samplesheet
    @sofstam
    sofstam committed Oct 14, 2024
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Commits on Oct 15, 2024

  1. [automated] Fix code linting

    @nf-core-bot
    nf-core-bot committed Oct 15, 2024
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  2. Add pattern to nextflow_schema.json

    @sofstam
    sofstam committed Oct 15, 2024
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  3. Prettier

    @sofstam
    sofstam committed Oct 15, 2024
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  4. Review suggestions and new function

    @sofstam
    sofstam committed Oct 15, 2024
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Commits on Oct 16, 2024

  1. Update docs/output.md 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @sofstam @jfy133
    sofstam and jfy133 authored Oct 16, 2024
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  2. Update docs/output.md 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @sofstam @jfy133
    sofstam and jfy133 authored Oct 16, 2024
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  3. Remove tests folder

    @sofstam
    sofstam committed Oct 16, 2024
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  4. Merge branch 'generate-samplesheet' of https://github.com/sofstam/tax… 

    …profiler into generate-samplesheet
    @sofstam
    sofstam committed Oct 16, 2024
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Commits on Oct 17, 2024

  1. Use the same function as detaxizer

    @sofstam
    sofstam committed Oct 17, 2024
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  2. LintinG

    @sofstam
    sofstam committed Oct 17, 2024
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Commits on Oct 22, 2024

  1. [automated] Fix code linting

    @nf-core-bot
    nf-core-bot committed Oct 22, 2024
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Commits on Oct 24, 2024

  1. Apply suggestions from code review

    @jfy133
    jfy133 authored Oct 24, 2024
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  2. Get the samplesheet generate to generate se reads

    @jfy133
    jfy133 committed Oct 24, 2024
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  3. Fix run column

    @jfy133
    jfy133 committed Oct 24, 2024
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