Adding BLAST-indexed database for SARS-CoV-2 proteome FASTA

README.md

@@ -70,6 +70,7 @@ The folder is structured in the following way: Any nonspecific-pangenome file is
   - cnn
     - 'reference.cnn': exemplary copy-number reference file for MT192765.1 genome
   - db
+    - 'blast': BLAST formatted DB files and list of FASTA entries
     - 'kaiju': Kaiju DB. Database created from ORF1ab polyprotein UNJ12943.1 and taxonomic ID 2697049
     - 'kraken2': kraken2 DB
     - 'kraken2.tar.gz': kraken2 DB archive

data/genomics/sarscov2/genome/db/blast/proteome.fasta.pjs

@@ -0,0 +1,24 @@
+{
+  "version": "1.2",
+  "dbname": "proteome.fasta",
+  "dbtype": "Protein",
+  "db-version": 5,
+  "description": "proteome.fasta",
+  "number-of-letters": 14149,
+  "number-of-sequences": 12,
+  "last-updated": "2024-03-20T17:02:00",
+  "number-of-volumes": 1,
+  "bytes-total": 68234,
+  "bytes-to-cache": 14362,
+  "files": [
+    "proteome.fasta.pdb",
+    "proteome.fasta.phr",
+    "proteome.fasta.pin",
+    "proteome.fasta.pog",
+    "proteome.fasta.pos",
+    "proteome.fasta.pot",
+    "proteome.fasta.psq",
+    "proteome.fasta.ptf",
+    "proteome.fasta.pto"
+  ]
+}

data/genomics/sarscov2/genome/db/blast/proteome.list

@@ -0,0 +1,12 @@
+ENSSASP00005000002.1
+ENSSASP00005000003.1
+ENSSASP00005000004.1
+ENSSASP00005000005.1
+ENSSASP00005000006.1
+ENSSASP00005000007.1
+ENSSASP00005000008.1
+ENSSASP00005000009.1
+ENSSASP00005000010.1
+ENSSASP00005000011.1
+ENSSASP00005000012.1
+ENSSASP00005000013.1