Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Radseq #739

Open
wants to merge 36 commits into
base: radseq
Choose a base branch
from
Open

Radseq #739

wants to merge 36 commits into from

Commits on Dec 12, 2022

  1. added testdata, reference, samplesheet, moved files, and added incomp… 

    …lete documentation to README.md
    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Dec 12, 2022
    Configuration menu
    Copy the full SHA
    b2dc64e View commit details
    Browse the repository at this point in the history

Commits on Jan 25, 2023

  1. adding samplesheet and readme

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    5418c67 View commit details
    Browse the repository at this point in the history

  2. adding chromosome 1 for testdata reference mode

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    0802c42 View commit details
    Browse the repository at this point in the history

  3. adding testdata/ddRAD/Golden3B05.1.fq.gz

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    ddb9e7a View commit details
    Browse the repository at this point in the history

  4. adding testdata/ddRAD/Golden3B05.1.fq.gz

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    9986b8a View commit details
    Browse the repository at this point in the history

  5. add testdata/ddRAD/Golden3B05.2.fq.gz

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    ff1c96d View commit details
    Browse the repository at this point in the history

  6. add testdata/ddRAD/Golden3B08.1.fq.gz

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    733d16f View commit details
    Browse the repository at this point in the history

  7. testdata/ddRAD/Golden3B08.2.fq.gz

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    f7dd65a View commit details
    Browse the repository at this point in the history

  8. add testdata/ddRAD/Golden3B12.1.fq.gz

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    9e6c336 View commit details
    Browse the repository at this point in the history

  9. add testdata/ddRAD/Golden3B12.2.fq.gz

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    ce63dfd View commit details
    Browse the repository at this point in the history

  10. testdata/ddRAD/Golden7A01.1.fq.gz

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    59dc018 View commit details
    Browse the repository at this point in the history

  11. add testdata/ddRAD/Golden7A01.2.fq.gz

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    4c2915c View commit details
    Browse the repository at this point in the history

  12. popmap and readme.md edits

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    57a7749 View commit details
    Browse the repository at this point in the history

Commits on Feb 7, 2023

  1. change url path to my user path github content

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Feb 7, 2023
    Configuration menu
    Copy the full SHA
    50c70c1 View commit details
    Browse the repository at this point in the history

Commits on Apr 12, 2023

  1. removed /ArcticGrayling/ from path in input.csv

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Apr 12, 2023
    Configuration menu
    Copy the full SHA
    fb28640 View commit details
    Browse the repository at this point in the history

  2. adding simulated data

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Apr 12, 2023
    Configuration menu
    Copy the full SHA
    e9d5c4f View commit details
    Browse the repository at this point in the history

  3. adding genome zipped

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Apr 12, 2023
    Configuration menu
    Copy the full SHA
    5322163 View commit details
    Browse the repository at this point in the history

  4. switch Ch1.fa.gz to bgzip

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Apr 12, 2023
    Configuration menu
    Copy the full SHA
    1966879 View commit details
    Browse the repository at this point in the history

Commits on Apr 25, 2023

  1. adding hsc chr26 testdataset

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Apr 25, 2023
    Configuration menu
    Copy the full SHA
    510019d View commit details
    Browse the repository at this point in the history

  2. adding actual updates to README.md and zipping reference chr26

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Apr 25, 2023
    Configuration menu
    Copy the full SHA
    f02ed12 View commit details
    Browse the repository at this point in the history

  3. corrections to samplesheet

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Apr 25, 2023
    Configuration menu
    Copy the full SHA
    f841ebc View commit details
    Browse the repository at this point in the history

  4. adding test-data

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Apr 25, 2023
    Configuration menu
    Copy the full SHA
    be43b81 View commit details
    Browse the repository at this point in the history

  5. Update samplesheet_test_lpolyphemus_ddrad_sbfi_mluci_chr26.csv

    @Gabriel-A-Barrett
    Gabriel-A-Barrett authored Apr 25, 2023
    Configuration menu
    Copy the full SHA
    d10a432 View commit details
    Browse the repository at this point in the history

Commits on Apr 26, 2023

  1. corrected samplesheet

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Apr 26, 2023
    Configuration menu
    Copy the full SHA
    bd8304c View commit details
    Browse the repository at this point in the history

  2. Merge branch 'radseq' of https://github.com/Gabriel-A-Barrett/test-da… 

    …tasets into radseq
    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Apr 26, 2023
    Configuration menu
    Copy the full SHA
    21bdf9d View commit details
    Browse the repository at this point in the history

Commits on Jun 9, 2023

  1. Update README.md

    @Gabriel-A-Barrett
    Gabriel-A-Barrett authored Jun 9, 2023
    Configuration menu
    Copy the full SHA
    8907c66 View commit details
    Browse the repository at this point in the history

Commits on Aug 19, 2023

  1. rmv sample 9

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    3836a55 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'radseq' of https://github.com/Gabriel-A-Barrett/test-da… 

    …tasets into radseq
    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    9a457a7 View commit details
    Browse the repository at this point in the history

  3. rmv sample 9

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    4f1afb7 View commit details
    Browse the repository at this point in the history

  4. rmv sample 9

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    1586957 View commit details
    Browse the repository at this point in the history

  5. rmv sample 9

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    6904e81 View commit details
    Browse the repository at this point in the history

  6. solve invalid number of columns

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    912a40b View commit details
    Browse the repository at this point in the history

  7. solve invalid number of columns

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    23a6ba6 View commit details
    Browse the repository at this point in the history

  8. fixing over samplesize

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    e93de12 View commit details
    Browse the repository at this point in the history

  9. fixing over samplesize

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    0cf839c View commit details
    Browse the repository at this point in the history

  10. solved spelling in chr26 samplesheet

    @Gabriel-A-Barrett
    Gabriel-A-Barrett committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    debf572 View commit details
    Browse the repository at this point in the history