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Refactor --callers into individual --variant_caller / --consensus_caller params for flexibility #260

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merged 21 commits into from
Jan 26, 2022

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drpatelh
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@drpatelh drpatelh changed the base branch from master to dev January 25, 2022 18:21
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This PR is against the master branch ❌

  • Do not close this PR
  • Click Edit and change the base to dev
  • This CI test will remain failed until you push a new commit

Hi @drpatelh,

It looks like this pull-request is has been made against the drpatelh/nf-core-viralrecon master branch.
The master branch on nf-core repositories should always contain code from the latest release.
Because of this, PRs to master are only allowed if they come from the drpatelh/nf-core-viralrecon dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page.
Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

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github-actions bot commented Jan 25, 2022

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 445b636

+| ✅ 132 tests passed       |+
#| ❔   5 tests were ignored |#
!| ❗   3 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: assets/multiqc_config.yaml
  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: lib/WorkflowViralrecon.groovy

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.2
  • Run at 2022-01-25 21:13:25

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@saramonzon saramonzon left a comment

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looks great! Let's try it!

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2 participants