RNA-Seq in the Cloud

June 21 & 23, 2021

CFDE Workshop

Open access

Requires github login

Adapted for CFDE workshop from materials developed by Taylor Reiter and N. Tessa Pierce for 2020-ggg-201b course at UC Davis.

To run snakemake in binder --

snakemake -j 4 --use-conda

Name		Name	Last commit message	Last commit date
Latest commit History 79 Commits
_static		_static
binder		binder
rnaseq/quant		rnaseq/quant
yeast_ref		yeast_ref
.gitignore		.gitignore
README.md		README.md
Snakefile		Snakefile
diffexp_tximeta.R		diffexp_tximeta.R
rna-seq-workflow-workshop.jpeg		rna-seq-workflow-workshop.jpeg
rnaseq-env.yml		rnaseq-env.yml
rnaseq-workflow.Rmd		rnaseq-workflow.Rmd
rnaseq-workflow.html		rnaseq-workflow.html
rnaseq-workflow.pdf		rnaseq-workflow.pdf
rnaseq_samples.csv		rnaseq_samples.csv
workshop_commands.sh		workshop_commands.sh