FIX: typo in omp_threads #208
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Python package | |
| on: | |
| push: | |
| branches: [ '*' ] | |
| tags: [ '*' ] | |
| pull_request: | |
| branches: [ master, 'maint/*' ] | |
| jobs: | |
| build: | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.7, 3.8] | |
| pip: ["pip~=20.3", "pip~=21.0"] | |
| steps: | |
| - name: Install hdf5 libraries | |
| run: | | |
| sudo apt-get install pkg-config libhdf5-103 libhdf5-dev | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v2 | |
| with: | |
| ssh-key: "${{ secrets.NIPREPS_DEPLOY }}" | |
| - name: Fetch all tags (for versioneer to work) | |
| if: "!startsWith(github.ref, 'refs/tags/')" | |
| run: | | |
| /usr/bin/git -c protocol.version=2 fetch --tags --prune --unshallow origin | |
| - name: Build in confined, updated environment and interpolate version | |
| run: | | |
| python -m venv /tmp/buildenv | |
| source /tmp/buildenv/bin/activate | |
| python -m pip install -U setuptools pip wheel twine docutils | |
| python setup.py sdist bdist_wheel | |
| python -m twine check dist/dmriprep* | |
| # Interpolate version | |
| if [[ "$GITHUB_REF" == refs/tags/* ]]; then | |
| TAG=${GITHUB_REF##*/} | |
| fi | |
| THISVERSION=$( python get_version.py ) | |
| THISVERSION=${TAG:-$THISVERSION} | |
| echo "Expected VERSION: \"${THISVERSION}\"" | |
| echo "THISVERSION=${THISVERSION}" >> ${GITHUB_ENV} | |
| - name: Install in confined environment [sdist] | |
| run: | | |
| python -m venv /tmp/install_sdist | |
| source /tmp/install_sdist/bin/activate | |
| python -m pip install "${{ matrix.pip }}" setuptools | |
| python -m pip install dist/dmriprep*.tar.gz | |
| INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")') | |
| echo "VERSION: \"${THISVERSION}\"" | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| - name: Install in confined environment [wheel] | |
| run: | | |
| python -m venv /tmp/install_wheel | |
| source /tmp/install_wheel/bin/activate | |
| python -m pip install "${{ matrix.pip }}" setuptools | |
| python -m pip install dist/dmriprep*.whl | |
| INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")') | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| - name: Install in confined environment [setup.py - install] | |
| run: | | |
| python -m venv /tmp/setup_install | |
| source /tmp/setup_install/bin/activate | |
| python -m pip install "${{ matrix.pip }}" setuptools | |
| python -m pip install numpy scipy "Cython >= 0.28.5" # sklearn needs this | |
| python -m pip install scikit-learn # otherwise it attempts to build it | |
| python setup.py install | |
| INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")') | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| - name: Install in confined environment [setup.py - develop] | |
| run: | | |
| python -m venv /tmp/setup_develop | |
| source /tmp/setup_develop/bin/activate | |
| python -m pip install "${{ matrix.pip }}" setuptools | |
| # sklearn needs these dependencies | |
| python -m pip install numpy scipy "Cython >= 0.28.5" | |
| python -m pip install scikit-learn # otherwise it attempts to build it | |
| python setup.py develop | |
| INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")') | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| flake8: | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.7 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.7 | |
| - run: pip install flake8 | |
| - run: flake8 dmriprep |