MAINT: Revert addition of tox #63
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Unit and integration tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - maint/* | |
| pull_request: | |
| branches: | |
| - main | |
| - maint/* | |
| # Allow job to be triggered manually from GitHub interface | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash | |
| # Force tox and pytest to use color | |
| env: | |
| FORCE_COLOR: true | |
| TEST_DATA_HOME: /home/runner/eddymotion-tests/ | |
| ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS: 4 | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| jobs: | |
| test: | |
| runs-on: 'ubuntu-latest' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - uses: mamba-org/[email protected] | |
| with: | |
| environment-file: env.yml | |
| init-shell: bash | |
| cache-environment: true | |
| cache-environment-key: environment-v1 | |
| cache-downloads: false | |
| post-cleanup: 'none' | |
| generate-run-shell: true | |
| # https://github.com/mamba-org/setup-micromamba/issues/225 | |
| micromamba-version: 1.5.10-0 | |
| micromamba-binary-path: /home/runner/micromamba-bin-versioned/micromamba | |
| - uses: actions/cache/restore@v4 | |
| with: | |
| path: /home/runner/eddymotion-tests/ | |
| key: data-v0 | |
| - name: Get test data with DataLad | |
| shell: micromamba-shell {0} | |
| run: | | |
| if [[ ! -d "${TEST_DATA_HOME}" ]]; then | |
| datalad install -rg --source=https://gin.g-node.org/nipreps-data/tests-eddymotion.git ${TEST_DATA_HOME} | |
| else | |
| cd ${TEST_DATA_HOME} | |
| datalad update --merge -r . | |
| datalad get -r -J4 * | |
| fi | |
| - uses: actions/cache/save@v4 | |
| with: | |
| path: /home/runner/eddymotion-tests/ | |
| key: data-v0 | |
| - name: Install editable | |
| shell: micromamba-shell {0} | |
| run: | | |
| pip install -e . | |
| - name: Run tests | |
| shell: micromamba-shell {0} | |
| run: | | |
| pytest --doctest-modules --cov eddymotion -n auto -x --cov-report xml \ | |
| --junitxml=test-results.xml -v src test | |
| - uses: codecov/codecov-action@v4 | |
| if: ${{ always() }} | |
| with: | |
| files: cov.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} |