Update zenodo #23
Workflow file for this run
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| name: Test tutorials | |
| on: | |
| push: | |
| branches: | |
| - "rel/*" | |
| concurrency: | |
| group: tutorials-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: {} | |
| jobs: | |
| tutorial: | |
| runs-on: ubuntu-latest | |
| env: | |
| BRANCH_NAME: ${{ github.ref_name }} | |
| steps: | |
| - name: Start time | |
| id: start | |
| run: echo start_time=$(date +'%Y-%m-%dT%H:%M:%S%z') >> $GITHUB_OUTPUT | |
| - name: Trigger Nipype tutorial Github Action | |
| run: | | |
| set -x | |
| curl -X POST \ | |
| -H "Authorization: Bearer ${{ secrets.TUTORIAL_ACCESS_TOKEN }}" \ | |
| -H "Accept: application/vnd.github+json" \ | |
| https://api.github.com/repos/miykael/nipype_tutorial/actions/workflows/testing.yml/dispatches \ | |
| -d '{"ref": "master", "inputs": {"nipype_branch": "'${BRANCH_NAME}'"}}' | |
| sleep 10 | |
| - name: Check Action was successfully dispatched | |
| id: dispatched | |
| run: | | |
| START=${{ steps.start.outputs.start_time }} | |
| RUN_ID=$(curl -s -H "Accept: application/vnd.github+json" \ | |
| 'https://api.github.com/repos/miykael/nipype_tutorial/actions/runs?created=>'${START}'&per_page=1' \ | |
| | jq -r '.workflow_runs[0].id') | |
| # fail if not extracted | |
| [[ -n $RUN_ID ]] || exit 1 | |
| echo run_id=$RUN_ID >> $GITHUB_OUTPUT | |
| - name: Check if action completed | |
| timeout-minutes: 120 | |
| run: | | |
| RUN_ID=${{ steps.dispatched.outputs.run_id }} | |
| while : | |
| do | |
| TIMESTAMP=$(date +'%Y-%m-%dT%H:%M:%S%z') | |
| # check status every 5 minutes | |
| STATUS=$(curl -s -H "Accept: application/vnd.github+json" \ | |
| https://api.github.com/repos/miykael/nipype_tutorial/actions/runs/${RUN_ID} \ | |
| | jq -r '.conclusion') | |
| case $STATUS in | |
| success) | |
| echo "[$TIMESTAMP] Tutorial run $RUN_ID completed successfully." | |
| exit 0 | |
| ;; | |
| failure) | |
| echo "[$TIMESTAMP] Tutorial run $RUN_ID failed." | |
| exit 1 | |
| ;; | |
| *) | |
| echo "[$TIMESTAMP] Conclusion ($STATUS) is not yet complete" | |
| sleep 300 | |
| esac | |
| done | |
| - name: Cancel ongoing run if cancelled or failed | |
| if: ${{ failure() || cancelled() }} | |
| run: | | |
| set -x | |
| RUN_ID=${{ steps.dispatched.outputs.run_id }} | |
| echo "Something went wrong, cancelling dispatched run" | |
| curl -s -X POST \ | |
| -H "Accept: application/vnd.github+json" \ | |
| -H "Authorization: Bearer ${{ secrets.TUTORIAL_ACCESS_TOKEN }}" \ | |
| https://api.github.com/repos/miykael/nipype_tutorial/actions/runs/${RUN_ID}/cancel |