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Type checking and coercion #884

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Type checking and coercion

Type checking and coercion #884

Workflow file for this run

.github/workflows/testslurm.yml at 9c1a0d5
name: SLURM
on:
push:
branches:
- master
pull_request:
jobs:
build:
runs-on: ubuntu-latest
env:
DOCKER_IMAGE: mgxd/slurm:19.05.1
steps:
- name: Disable etelemetry
run: echo "NO_ET=TRUE" >> $GITHUB_ENV
- uses: actions/checkout@v3
- name: Pull docker image
run: |
docker pull $DOCKER_IMAGE
# Have image running in background
docker run `bash <(curl -s https://codecov.io/env)` -itd -h ernie --name slurm -v `pwd`:/pydra -e NO_ET=$NO_ET $DOCKER_IMAGE
- name: Update python
run: docker exec slurm bash -c "conda install python==3.7.16"
- name: Display previous jobs with sacct
run: |
echo "Allowing ports/daemons time to start" && sleep 10
docker exec slurm bash -c "sacctmgr -i add cluster name=linux \
&& supervisorctl restart slurmdbd \
&& supervisorctl restart slurmctld \
&& sacctmgr -i add account none,test Cluster=linux Description='none' Organization='none'"
docker exec slurm bash -c "sacct && sinfo && squeue" 2&> /dev/null
if [ $? -ne 0 ]; then
echo "Slurm docker image error"
exit 1
fi
- name: Setup Python
run: |
docker exec slurm bash -c "echo $NO_ET"
docker exec slurm bash -c "ls -la && echo list top level dir"
docker exec slurm bash -c "ls -la /pydra && echo list pydra dir"
docker exec slurm bash -c "pip install --upgrade pip && pip install -e /pydra[test] && python -c 'import pydra; print(pydra.__version__)'"
- name: Run pytest
run: docker exec slurm bash -c "pytest --color=yes -vs -n auto --cov pydra --cov-config /pydra/.coveragerc --cov-report xml:/pydra/cov.xml --doctest-modules /pydra/pydra"
- name: Upload to codecov
run: |
docker exec slurm bash -c "codecov --root /pydra -f /pydra/cov.xml -F unittests"
docker rm -f slurm