Protein Database

PDB files for proteins we are interested in that consist of the following:

• Purely monomeric proteins (i.e, no ligands, hemes, dna, etc.)
• <500 amino acids in length
• (anything else here...)

Idealy we would have useful scripts (i.e., index mapping, jackhammer, etc.) on here as well.

To-do:

• add pdbs to a folder
• add a table listing the pdbid, length, monomer/dimer/complex, etc.
• automate jackhammer integration to extract sequences from pdb and make msa
• automate index mapping and include an list of maps readily available