CRAN acceptance

CRAN-SUBMISSION

@@ -1,3 +1,3 @@
-Version: 1.2.0
-Date: 2023-09-11 22:08:20 UTC
-SHA: ba10aa7dd9c9ea57675350652ba4e2bf4df1b7cf
+Version: 1.3.1
+Date: 2024-01-24 17:50:23 UTC
+SHA: 762aac6f412d4cd1d25d68b5d75be87a00614097

DESCRIPTION

@@ -44,7 +44,6 @@ BugReports: https://github.com/noaa-nwfsc/zoid/issues
 Depends: 
     R (>= 3.4.0)
 Imports: 
-    compositions,
     gtools,
     methods,
     Rcpp (>= 0.12.0),

NEWS.md

@@ -1,3 +1,11 @@
+# zoid 1.3.1
+
+* Remove dependency on compositions package, change URLs to noaa-nwfsc
+
+# zoid 1.3.0
+
+* Updated models to allow for random effects
+
 # zoid 1.2.0
 
 * Updated Stan code to reflect changes needed to be compatible with Stan 2.26 (arrays)

R/fitting.R

@@ -30,18 +30,18 @@
 #'   nrow = 3, byrow = TRUE
 #' )
 #' # fit a model with no covariates
-#' fit <- fit_zoid(data_matrix = y)
+#' fit <- fit_zoid(data_matrix = y, chains = 1, iter = 100)
 #'
 #' # fit a model with 1 factor
 #' design <- data.frame("fac" = c("spring", "spring", "fall"))
-#' fit <- fit_zoid(formula = ~fac, design_matrix = design, data_matrix = y)
+#' fit <- fit_zoid(formula = ~fac, design_matrix = design, data_matrix = y, chains = 1, iter = 100)
 #' }
 #' # try a model with random effects
 #' set.seed(123)
 #' y <- matrix(runif(99,1,4), ncol=3)
 #' design <- data.frame("fac" = sample(letters[1:5], size=nrow(y), replace=TRUE))
 #' design$fac <- as.factor(design$fac)
-#' fit <- fit_zoid(formula = ~(1|fac), design_matrix = design, data_matrix = y)
+#' fit <- fit_zoid(formula = ~(1|fac), design_matrix = design, data_matrix = y, chains = 1, iter = 100)
 #'
 fit_zoid <- function(formula = NULL,
                          design_matrix,

inst/CITATION

@@ -14,5 +14,5 @@ bibentry(bibtype = "Manual",
                     ),
          year = year,
          note = note,
-         url = "https://nwfsc-cb.github.io/zoid/")
+         url = "https://noaa-nwfsc.github.io/zoid/")