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Add .compute() to null filter (line 887) of extrapolate_water_elevation_to_dry_areas() #942

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Add .compute() to null filter (line 887) of extrapolate_water_elevation_to_dry_areas()

Add .compute() to null filter (line 887) of extrapolate_water_elevation_to_dry_areas() #942

Workflow file for this run

.github/workflows/tests.yml at f66f9c4
name: tests
on:
push:
branches:
- main
paths:
- '**.py'
- '.github/workflows/tests.yml'
- 'pyproject.toml'
pull_request:
branches:
- main
jobs:
lint:
name: lint
runs-on: ubuntu-latest
steps:
- name: clone repository
uses: actions/checkout@v4
- name: install Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: load cached Python installation
id: cache
uses: actions/cache@v4
with:
path: ${{ env.pythonLocation }}
key: lint-${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }}
- name: install linters
run: pip install flake8 oitnb
- name: lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: lint with oitnb
run: oitnb . --check
test:
needs: lint
name: test
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ ubuntu-latest, macos-latest ]
python-version: [ '3.9', '3.10', '3.11' ]
steps:
- name: clone repository
uses: actions/checkout@v4
- name: conda virtual environment
uses: mamba-org/setup-micromamba@v1
with:
init-shell: bash
environment-name: ci-env
create-args: >-
python=${{ matrix.python-version }}
libnetcdf
hdf5
udunits2
- name: install dependencies
run: pip install ".[testing]"
shell: micromamba-shell {0}
- name: rebuild netcdf from source
run: pip install --upgrade --force-reinstall --no-deps --no-cache-dir netcdf4 --no-binary netcdf4
shell: micromamba-shell {0}
- name: run tests
run: pytest --numprocesses auto
shell: micromamba-shell {0}
test_with_coverage:
needs: [ lint, test ]
name: test with coverage
runs-on: ubuntu-latest
steps:
- name: clone repository
uses: actions/checkout@v4
- name: conda virtual environment
uses: mamba-org/setup-micromamba@v1
with:
init-shell: bash
environment-name: ci-env
create-args: >-
python=3.9
libnetcdf
hdf5
udunits2
- name: install dependencies
run: pip install ".[testing]"
shell: micromamba-shell {0}
- name: rebuild netcdf from source
run: pip install --upgrade --force-reinstall --no-deps --no-cache-dir netcdf4 --no-binary netcdf4
shell: micromamba-shell {0}
- name: run tests with coverage
run: pytest --numprocesses auto --cov . --cov-report xml:coverage.xml
shell: micromamba-shell {0}
- name: show coverage report
run: coverage report
shell: micromamba-shell {0}
- name: upload coverage to Codecov
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
files: coverage.xml
fail_ci_if_error: true