add python script for ensemble vortex generation

.github/workflows/tests.yml

@@ -9,7 +9,7 @@ jobs:
     strategy:
       fail-fast: true
       matrix:
-        os: [ ubuntu-latest ]
+        os: [ ubuntu-latest, windows-latest ]
         python-version: [ 3.8, 3.9 ]
     steps:
       - name: Checkout repository
@@ -41,7 +41,7 @@ jobs:
           # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
           flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
       - name: Run tests with coverage
-        run: pytest --cov=ensembleperturbation --numprocesses auto --ignore=tests/test_parser.py
+        run: pytest --cov=ensembleperturbation --numprocesses auto
       - name: Upload coverage to Codecov
         if: matrix.python-version == 3.9
         uses: codecov/codecov-action@v1

.gitignore

@@ -141,3 +141,4 @@ cython_debug/
 
 .idea/
 /examples/data/*
+/tests/data/output

ensembleperturbation/parsing/adcirc.py

@@ -10,8 +10,8 @@
 from pandas import DataFrame
 from shapely.geometry import Point
 
-from ..utilities import get_logger
-from .utilities import decode_time
+from ensembleperturbation.parsing.utilities import decode_time
+from ensembleperturbation.utilities import get_logger
 
 LOGGER = get_logger('parsing.adcirc')
 

ensembleperturbation/parsing/comparison.py

@@ -12,8 +12,12 @@
 from pyproj import CRS, Geod
 import shapely
 
-from ..utilities import get_logger
-from .adcirc import fort61_stations_zeta, fort62_stations_uv, parse_adcirc_outputs
+from ensembleperturbation.parsing.adcirc import (
+    fort61_stations_zeta,
+    fort62_stations_uv,
+    parse_adcirc_outputs,
+)
+from ensembleperturbation.utilities import get_logger
 
 LOGGER = get_logger('parsing.comparison')