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Merge pull request #2163 from obophenotype/2158-edit-subclasses_kidne…
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Addresses #2158 Refine subclasses of 'kidney cell'
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bvarner-ebi authored Oct 2, 2023
2 parents 76189e3 + ed91e07 commit 3fc683f
Showing 1 changed file with 17 additions and 22 deletions.
39 changes: 17 additions & 22 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -20458,11 +20458,11 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002680 obo:CL_0000696

# Class: obo:CL_0002681 (kidney cortical cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_0002681 "A cell that is part of a cortex of kidney.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_0002681 <https://orcid.org/0000-0002-0956-8634>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002681 "2011-10-25T03:49:41Z")
AnnotationAssertion(rdfs:label obo:CL_0002681 "kidney cortical cell")
EquivalentClasses(obo:CL_0002681 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001225)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002681 obo:CL_1000497)

# Class: obo:CL_0003001 (bistratified retinal ganglion cell)

Expand Down Expand Up @@ -26527,41 +26527,38 @@ SubClassOf(obo:CL_1000495 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000190

# Class: obo:CL_1000497 (kidney cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1000497 "A cell that is part of a kidney.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000497 "KUPO:0001010")
AnnotationAssertion(rdfs:label obo:CL_1000497 "kidney cell")
EquivalentClasses(obo:CL_1000497 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002113)))

# Class: obo:CL_1000500 (kidney interstitial cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1000500 "A cell that is part of kidney interstitium.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000500 "KUPO:0001013")
AnnotationAssertion(rdfs:label obo:CL_1000500 "kidney interstitial cell")
EquivalentClasses(obo:CL_1000500 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005215)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000500 obo:CL_1000497)
SubClassOf(obo:CL_1000500 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005215))

# Class: obo:CL_1000504 (kidney medulla cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1000504 "A cell that is part of a renal medulla.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000504 "KUPO:0001017")
AnnotationAssertion(rdfs:label obo:CL_1000504 "kidney medulla cell")
EquivalentClasses(obo:CL_1000504 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000362)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000504 obo:CL_1000497)
SubClassOf(obo:CL_1000504 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000362))

# Class: obo:CL_1000505 (kidney pelvis cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1000505 "A cell that is part of a renal pelvis.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000505 "KUPO:0001018")
AnnotationAssertion(rdfs:label obo:CL_1000505 "kidney pelvis cell")
EquivalentClasses(obo:CL_1000505 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001224)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000505 obo:CL_1000497)
SubClassOf(obo:CL_1000505 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001224))

# Class: obo:CL_1000507 (kidney tubule cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1000507 "A cell that is part of a nephron tubule.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000507 "KUPO:0001020")
AnnotationAssertion(rdfs:label obo:CL_1000507 "kidney tubule cell")
EquivalentClasses(obo:CL_1000507 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001231)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000507 obo:CL_1000497)
SubClassOf(obo:CL_1000507 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001231))

# Class: obo:CL_1000510 (kidney glomerular epithelial cell)

Expand All @@ -26573,36 +26570,33 @@ SubClassOf(obo:CL_1000510 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000418

# Class: obo:CL_1000546 (kidney medulla collecting duct epithelial cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1000546 "An epithelial cell that is part of a renal medulla collecting duct.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000546 "KUPO:0001060")
AnnotationAssertion(rdfs:label obo:CL_1000546 "kidney medulla collecting duct epithelial cell")
EquivalentClasses(obo:CL_1000546 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005185)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000546 obo:CL_1000497)
SubClassOf(obo:CL_1000546 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005185))
EquivalentClasses(obo:CL_1000546 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005185)))

# Class: obo:CL_1000547 (kidney inner medulla collecting duct epithelial cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1000547 "An epithelial cell that is part of some inner medullary collecting duct.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000547 "KUPO:0001061")
AnnotationAssertion(rdfs:label obo:CL_1000547 "kidney inner medulla collecting duct epithelial cell")
EquivalentClasses(obo:CL_1000547 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004205)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000547 obo:CL_1000497)
SubClassOf(obo:CL_1000547 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004205))
EquivalentClasses(obo:CL_1000547 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004205)))
SubClassOf(obo:CL_1000547 obo:CL_1000546)

# Class: obo:CL_1000548 (kidney outer medulla collecting duct epithelial cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1000548 "An epithelial cell that is part of an outer medullary collecting duct.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000548 "KUPO:0001062")
AnnotationAssertion(rdfs:label obo:CL_1000548 "kidney outer medulla collecting duct epithelial cell")
EquivalentClasses(obo:CL_1000548 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004204)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000548 obo:CL_1000497)
SubClassOf(obo:CL_1000548 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004204))
EquivalentClasses(obo:CL_1000548 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004204)))
SubClassOf(obo:CL_1000548 obo:CL_1000546)

# Class: obo:CL_1000549 (kidney cortex collecting duct epithelial cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1000549 "An epithelial cell that is part of a cortical collecting duct.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000549 "KUPO:0001063")
AnnotationAssertion(rdfs:label obo:CL_1000549 "kidney cortex collecting duct epithelial cell")
EquivalentClasses(obo:CL_1000549 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004203)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000549 obo:CL_1000497)
SubClassOf(obo:CL_1000549 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004203))
EquivalentClasses(obo:CL_1000549 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004203)))

# Class: obo:CL_1000550 (kidney papillary duct principal epithelial cell)

Expand Down Expand Up @@ -27381,11 +27375,11 @@ SubClassOf(obo:CL_1001224 obo:CL_1001145)

# Class: obo:CL_1001225 (kidney collecting duct cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1001225 "A cell that is part of a collecting duct of renal tubule.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001225 "KUPO:0001012")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001225 "Wikipedia:Kidney_collecting_duct_cell")
AnnotationAssertion(rdfs:label obo:CL_1001225 "kidney collecting duct cell")
EquivalentClasses(obo:CL_1001225 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001232)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001225 obo:CL_1000497)

# Class: obo:CL_1001285 (vasa recta descending limb cell)

Expand Down Expand Up @@ -30631,6 +30625,7 @@ AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4030018 <https
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030018 "2022-06-27T15:25:10Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_4030018 "kidney connecting tubule principal cell")
EquivalentClasses(obo:CL_4030018 ObjectIntersectionOf(obo:CL_0005009 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005097)))
SubClassOf(obo:CL_4030018 obo:CL_1000768)

# Class: obo:CL_4030019 (kidney connecting tubule intercalated cell)

Expand Down

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