Fixes #2705 Textual and logical defs - ureter and urethra urothelial cell

[Caroline-99]

Added textual definition for the two terms + references AND removed redundant axioms

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-06/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-06/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

ureter urothelial cell http://purl.obolibrary.org/obo/CL_1000706

Removed

• ureter urothelial cell IAO_0000115 "Any urothelial cell that is part of some urothelium of ureter."

  • hasDbXref "FBC:Autogenerated"

• ureter urothelial cell SubClassOf ureteral cell

  • is_inferred "true"

• ureter urothelial cell SubClassOf urothelial cell

  • is_inferred "true"

Added

• ureter urothelial cell IAO_0000115 "A urothelial cell that is part of the urothelium of ureter."

  • hasDbXref "PMID:36180582"

• ureter urothelial cell SubClassOf urothelial cell

• ureter urothelial cell SubClassOf ureteral cell

urethra urothelial cell http://purl.obolibrary.org/obo/CL_1001430

Removed

• urethra urothelial cell IAO_0000115 "Any urothelial cell that is part of some urethra urothelium."

  • hasDbXref "FBC:Autogenerated"

• urethra urothelial cell SubClassOf urothelial cell

  • is_inferred "true"

Added

• urethra urothelial cell IAO_0000115 "A urothelial cell that is part of the urethra urothelium. This cell plays a crucial role in maintaining the urethral barrier function, protecting against toxic substances in urine, sensing environmental changes, and defending against pathogen entry."

  • hasDbXref "PMID:23589830"

  • hasDbXref "PMID:36180582"

• urethra urothelial cell SubClassOf urothelial cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

ureter urothelial cell http://purl.obolibrary.org/obo/CL_1000706

Removed

• ureter urothelial cell SubClassOf part of some urothelium of ureter

• ureter urothelial cell SubClassOf ureteral cell

  • is_inferred "true"

• ureter urothelial cell SubClassOf urothelial cell

  • is_inferred "true"

Added

• ureter urothelial cell definition "A urothelial cell that is part of the urothelium of ureter."
  • database_cross_reference "PMID:36180582"

urethra urothelial cell http://purl.obolibrary.org/obo/CL_1001430

Removed

• urethra urothelial cell SubClassOf urothelial cell

  • is_inferred "true"

• urethra urothelial cell SubClassOf part of some urethra urothelium

• urethra urothelial cell SubClassOf urethra cell

  • is_inferred "true"

Added

• urethra urothelial cell definition "A urothelial cell that is part of the urethra urothelium. This cell plays a crucial role in maintaining the urethral barrier function, protecting against toxic substances in urine, sensing environmental changes, and defending against pathogen entry."

  • database_cross_reference "PMID:23589830"

  • database_cross_reference "PMID:36180582"