Warning

This repo is archived/deprecated — please see https://github.com/ohsu-comp-bio/docker-centos7-slurm for the latest updates

Slurm on CentOS 6 Docker Image

This is an all-in-one Slurm installation. This container runs the following processes:

• slurmd (The compute node daemon for Slurm)
• slurmctld (The central management daemon of Slurm)
• slurmdbd (Slurm database daemon)
• munged (Authentication service for creating and validating credentials)
• mysql (Database for slurmdbd)
• supervisord (A process control system)

Usage

There are multiple tags available. To use the latest available image, run:

docker pull giovtorres/docker-centos6-slurm:latest
docker run -it -h ernie giovtorres/docker-centos6-slurm:latest

The above command will drop you into a bash shell inside the container. Supervisord is the process manager. To view the status of all the processes, run:

[root@ernie /]# supervisorctl status
munged                           RUNNING   pid 23, uptime 0:02:35
mysqld                           RUNNING   pid 24, uptime 0:02:35
slurmctld                        RUNNING   pid 25, uptime 0:02:35
slurmd                           RUNNING   pid 22, uptime 0:02:35
slurmdbd                         RUNNING   pid 26, uptime 0:02:35

In slurm.conf, the ControlMachine hostname is set to ernie. Since this is an all-in-one installation, the hostname must match ControlMachine. Therefore, you must pass the -h ernie to docker at run time so that the hostnames match.

You can run the usual slurm commands:

[root@ernie /]# sinfo
PARTITION AVAIL  TIMELIMIT  NODES  STATE NODELIST
normal*      up 5-00:00:00      5   idle c[1-5]

[root@ernie /]# scontrol show partition
PartitionName=normal
   AllowGroups=ALL AllowAccounts=ALL AllowQos=ALL
   AllocNodes=ALL Default=YES QoS=N/A
   DefaultTime=5-00:00:00 DisableRootJobs=NO ExclusiveUser=NO GraceTime=0 Hidden=NO
   MaxNodes=1 MaxTime=5-00:00:00 MinNodes=1 LLN=NO MaxCPUsPerNode=UNLIMITED
   Nodes=c[1-5]
   PriorityJobFactor=50 PriorityTier=50 RootOnly=NO ReqResv=NO OverSubscribe=NO
   OverTimeLimit=NONE PreemptMode=OFF
   State=UP TotalCPUs=5 TotalNodes=5 SelectTypeParameters=NONE
   DefMemPerCPU=500 MaxMemPerNode=UNLIMITED

Building

There are multiple versions of Slurm available, each in its own subdirectory. To build a particular version, change into the directory and build the Dockerfile:

git clone https://github.com/giovtorres/docker-centos6-slurm
cd docker-centos6-slurm/16.05.9
docker build -t docker-centos6-slurm:16.05.9 .

Notes

I use this container to get access to the Slurm headers and libraries for PySlurm development.

Important Note: This image is used for testing and development. It is not suited for any production use.