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Add bia ngff link to data page #256

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@will-moore will-moore commented Aug 15, 2024

Add link https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/pages/idr_ngff_data.html to data page.
NB data size is approx estimate from totals listed on studies.txt page before conversion to NGFF.

NB: I wonder if we want to add a note somewhere that opening Plates in vizarr often doesn't work because of the trailing /0 as it's expecting bioformats2raw format.
E.g https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/pages/S-BIAD847/02fb729e-803a-4c2e-b40c-cf58d839567c.html shows nothing, and when you open in vizarr you get:
https://hms-dbmi.github.io/vizarr/?source=https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD847/02fb729e-803a-4c2e-b40c-cf58d839567c/02fb729e-803a-4c2e-b40c-cf58d839567c.zarr/0 which looks broken.
You need to remove the trailing /0 before it's viewable:

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NB: I wonder if we want to add a note somewhere that opening Plates in vizarr often doesn't work because of the trailing /0 as it's expecting bioformats2raw format.

The other option, @will-moore, would be to update the pages themselves? cc: @matthewh-ebi

@manzt: any other ideas?

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👍 Happy to get this in though I'll leave open for the discussion of vizarr behavior.

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