bioshiny is a project to develop the R Shiny applications for bioinformatics research.

bioshiny

• One-click to create bioshiny Shiny application and plugins
• Create and share more plugins.
• Using npm and GitHub to share the Shiny applications and plugins (CRAN team limited file size)

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Installation

wget https://raw.githubusercontent.com/openbiox/bioshiny/master/bin/bioshiny_deps_r
wget https://raw.githubusercontent.com/openbiox/bioshiny/master/bin/bioshiny_start
chmod a+x bioshiny_deps_r
chmod a+x bioshiny_start

# For full toolsets
yarn global add bioshiny
bioshiny_deps_r

Usage

# Set bioshiny main database
echo 'export BIOSHINY_CONFIG="~/.bioshiny/shiny.config.yaml" >> ~/.bashrc'
# Set BioInstaller stored database
echo 'export BIO_SOFTWARES_DB_ACTIVE="~/.bioshiny/info.yaml"'
. ~/.bashrc
Rscript -e "bioshiny::set_shiny_workers(1)"
bioshiny_start

# vcfanno and annovar plugin need to set the tools path

How to contribute?

Please fork the GitHub bioshiny repository, modify it, and submit a pull request to us.

Maintainer

Jianfeng Li

License

MIT