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Allow configurable genotype for unknown "gaps" in aggregetion operation #1899

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j-coll opened this issue Feb 22, 2022 · 0 comments
Open

Allow configurable genotype for unknown "gaps" in aggregetion operation #1899

j-coll opened this issue Feb 22, 2022 · 0 comments
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hbase improvement storage
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v2.2.0

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j-coll commented Feb 22, 2022

When running an aggregation or aggregation-family operation over multiple non-gVCF files, there will appear mutliple positions where there is no information about many samples. These are the "gaps". By default, this was being filled with the unknown genotype "?/?". This should be configurable.
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