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ποΈ Remove numba #2313
ποΈ Remove numba #2313
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Signed-off-by: Ashwin Vaidya <[email protected]>
Signed-off-by: Ashwin Vaidya <[email protected]>
@@ -180,7 +162,6 @@ def binclf_multiple_curves( | |||
scores_batch: ndarray, |
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this function was like a demux for the two versions (python, numba), but without numba it becomes kind of redundant with the one that calls it (there are the validations tho)
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Yeah I plan to simplify this with several PRs
_validate.is_anomaly_maps(anomaly_maps) # redundant | ||
_validate.is_masks(masks) # redundant | ||
_validate.is_same_shape(anomaly_maps, masks) # redundant |
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they are redundant with the PIMO
class, right?
but if you call it without the class they aren't
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These were just for myself. I am going to refactor the validation stuff so that we do it once at the outermost level.
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It would be good to have @jpcbertoldo as a reviewer in your pr series..
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i am checking them ;)
@@ -303,7 +296,7 @@ def aupimo_scores( | |||
"Try increasing `num_threshs`.", | |||
) | |||
|
|||
aucs: ndarray = np.trapezoid(per_image_tprs_bounded, x=shared_fpr_bounded_log, axis=1) | |||
aucs: ndarray = np.trapz(per_image_tprs_bounded, x=shared_fpr_bounded_log, axis=1) # noqa: NPY201 deprecated in Numpy 2.0 |
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why trapz
instead of trapezoid
?
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imgaug does not support numpy 2.x, and np.trapezoid was introduced in numpy 2.x. Once imgaug is removed we can look into reverting this.
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Can we do something like this to avoid disabling ruff, and be more clear?
trapezoid = np.trapezoid if np.__version__ >= "2.0.0" else np.trapz
aucs: ndarray = trapezoid(per_image_tprs_bounded, x=shared_fpr_bounded_log, axis=1)
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Ruff still throws an error. And, we won't need this once we switch everything to torch
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fair enough
Signed-off-by: Ashwin Vaidya <[email protected]>
Codecov ReportAttention: Patch coverage is
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## feature/pimo #2313 +/- ##
===============================================
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Branches ? 0
===============================================
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* PIMO (#1726) * update Signed-off-by: jpcbertoldo <[email protected]> * test binclf curves numpy and numba and fixes Signed-off-by: jpcbertoldo <[email protected]> * correct som docstrings Signed-off-by: jpcbertoldo <[email protected]> * torch interface and tests Signed-off-by: jpcbertoldo <[email protected]> * torch interface and tests Signed-off-by: jpcbertoldo <[email protected]> * constants regrouped in dataclass as class vars Signed-off-by: jpcbertoldo <[email protected]> * result class was unneccesary for per_image_binclf_curve Signed-off-by: jpcbertoldo <[email protected]> * factorize function _get_threshs_minmax_linspace Signed-off-by: jpcbertoldo <[email protected]> * small docs fixes Signed-off-by: jpcbertoldo <[email protected]> * add pimo numpy version and test Signed-off-by: jpcbertoldo <[email protected]> * move validation Signed-off-by: jpcbertoldo <[email protected]> * add `shared_fpr_metric` option Signed-off-by: jpcbertoldo <[email protected]> * add pimo torch functional version and test Signed-off-by: jpcbertoldo <[email protected]> * add torchmetrics interface and test Signed-off-by: jpcbertoldo <[email protected]> * renames and put things in init Signed-off-by: jpcbertoldo <[email protected]> * validate inputs in result objects Signed-off-by: jpcbertoldo <[email protected]> * result objects to from dict and tests Signed-off-by: jpcbertoldo <[email protected]> * add save and load methods to result objects and test Signed-off-by: jpcbertoldo <[email protected]> * refactor validations and minor changes Signed-off-by: jpcbertoldo <[email protected]> * test result objects' properties Signed-off-by: jpcbertoldo <[email protected]> * minor refactors Signed-off-by: jpcbertoldo <[email protected]> * add missing docstrings Signed-off-by: jpcbertoldo <[email protected]> * minore vocabulary fix for consistency Signed-off-by: jpcbertoldo <[email protected]> * add per image scores statistics and test it Signed-off-by: jpcbertoldo <[email protected]> * refactor constants notation Signed-off-by: jpcbertoldo <[email protected]> * add stats tests and test it Signed-off-by: jpcbertoldo <[email protected]> * change the meaning of AUPIMO.num_thresh Signed-off-by: jpcbertoldo <[email protected]> * interface to format pairwise test results Signed-off-by: jpcbertoldo <[email protected]> * improve doc Signed-off-by: jpcbertoldo <[email protected]> * add optional `paths` to result objects and some minor fixes and refactors Signed-off-by: jpcbertoldo <[email protected]> * remove frozen from dataclasses and some done todos Signed-off-by: jpcbertoldo <[email protected]> * review headers Signed-off-by: jpcbertoldo <[email protected]> * doc modifs Signed-off-by: jpcbertoldo <[email protected]> * refactor `score_less_than_thresh` in `_binclf_one_curve_python` Signed-off-by: jpcbertoldo <[email protected]> * correct license comments Signed-off-by: jpcbertoldo <[email protected]> * fix doc Signed-off-by: jpcbertoldo <[email protected]> * numba as extra requirement Signed-off-by: jpcbertoldo <[email protected]> * refactor copyrights from jpcbertoldo Signed-off-by: jpcbertoldo <[email protected]> * remove from __future__ import annotations Signed-off-by: jpcbertoldo <[email protected]> * refactor validations names Signed-off-by: jpcbertoldo <[email protected]> * dedupe file path validation Signed-off-by: jpcbertoldo <[email protected]> * fix tests Signed-off-by: jpcbertoldo <[email protected]> * Add todo Signed-off-by: jpcbertoldo <[email protected]> * refactor enums Signed-off-by: jpcbertoldo <[email protected]> * only logger.warning Signed-off-by: jpcbertoldo <[email protected]> * refactor test imports Signed-off-by: jpcbertoldo <[email protected]> * refactor docs Signed-off-by: jpcbertoldo <[email protected]> * refactor some docs Signed-off-by: jpcbertoldo <[email protected]> * correct pre commit errors Signed-off-by: jpcbertoldo <[email protected]> * remove author tag Signed-off-by: jpcbertoldo <[email protected]> * add thrid party program Signed-off-by: jpcbertoldo <[email protected]> * Update src/anomalib/metrics/per_image/pimo.py * move HAS_NUMBA Signed-off-by: jpcbertoldo <[email protected]> * remove PIMOSharedFPRMetric Signed-off-by: jpcbertoldo <[email protected]> * make torchmetrics compute avg by dft Signed-off-by: jpcbertoldo <[email protected]> * pre-commit hooks corrections Signed-off-by: jpcbertoldo <[email protected]> * correct numpy.trapezoid Signed-off-by: jpcbertoldo <[email protected]> --------- Signed-off-by: jpcbertoldo <[email protected]> Co-authored-by: Samet Akcay <[email protected]> * ποΈ Remove numba (#2313) * remove numba Signed-off-by: Ashwin Vaidya <[email protected]> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <[email protected]> * add third-party-programs.txt Signed-off-by: Ashwin Vaidya <[email protected]> --------- Signed-off-by: Ashwin Vaidya <[email protected]> * ποΈ Remove unused methods (#2315) * remove numba Signed-off-by: Ashwin Vaidya <[email protected]> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <[email protected]> * remove all unused methods Signed-off-by: Ashwin Vaidya <[email protected]> --------- Signed-off-by: Ashwin Vaidya <[email protected]> * PIMO: Port Numpy β Torch (#2316) * remove numba Signed-off-by: Ashwin Vaidya <[email protected]> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <[email protected]> * remove all unused methods Signed-off-by: Ashwin Vaidya <[email protected]> * replace numpy with torch Signed-off-by: Ashwin Vaidya <[email protected]> --------- Signed-off-by: Ashwin Vaidya <[email protected]> * π¨Refactor methods across files (#2321) * remove numba Signed-off-by: Ashwin Vaidya <[email protected]> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <[email protected]> * remove all unused methods Signed-off-by: Ashwin Vaidya <[email protected]> * replace numpy with torch Signed-off-by: Ashwin Vaidya <[email protected]> * refactor code Signed-off-by: Ashwin Vaidya <[email protected]> * refactor move functional inside update remove path from the metric * Add changes from comments Signed-off-by: Ashwin Vaidya <[email protected]> --------- Signed-off-by: Ashwin Vaidya <[email protected]> * Remove model to model comparison (#2325) * rename to pimo Signed-off-by: Ashwin Vaidya <[email protected]> * minor refactor Signed-off-by: Ashwin Vaidya <[email protected]> * remove model to model comparison Signed-off-by: Ashwin Vaidya <[email protected]> * fix test Signed-off-by: Ashwin Vaidya <[email protected]> * PR comments Signed-off-by: Ashwin Vaidya <[email protected]> * Minor refactor Signed-off-by: Ashwin Vaidya <[email protected]> --------- Signed-off-by: Ashwin Vaidya <[email protected]> * PR comments Signed-off-by: Ashwin Vaidya <[email protected]> * Remove unused enums Signed-off-by: Ashwin Vaidya <[email protected]> * update doc strings Signed-off-by: Ashwin Vaidya <[email protected]> * update param names Signed-off-by: Ashwin Vaidya <[email protected]> * add aupimo basic usage tutorial notebook (#2330) * add aupimo basic usage tutorial notebook Signed-off-by: jpcbertoldo <[email protected]> * update scipy import Signed-off-by: jpcbertoldo <[email protected]> * add cite us Signed-off-by: jpcbertoldo <[email protected]> * minor Signed-off-by: jpcbertoldo <[email protected]> * modify texts and add illustration Signed-off-by: jpcbertoldo <[email protected]> * udpate working dir Signed-off-by: jpcbertoldo <[email protected]> --------- Signed-off-by: jpcbertoldo <[email protected]> --------- Signed-off-by: jpcbertoldo <[email protected]> Signed-off-by: Ashwin Vaidya <[email protected]> Co-authored-by: Joao P C Bertoldo <[email protected]> Co-authored-by: Samet Akcay <[email protected]>
* Update timm requirement from <=1.0.7,>=1.0.7 to >=1.0.7,<=1.0.9 (#2274) * Update timm requirement from <=1.0.7,>=1.0.7 to >=1.0.7,<=1.0.9 Updates the requirements on [timm](https://github.com/huggingface/pytorch-image-models) to permit the latest version. - [Release notes](https://github.com/huggingface/pytorch-image-models/releases) - [Commits](huggingface/pytorch-image-models@v1.0.7...v1.0.9) --- updated-dependencies: - dependency-name: timm dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Update pyproject.toml --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Samet Akcay <[email protected]> * πUpdate `setuptools` requirement for PEP 660 support (#2320) Update setup tools Signed-off-by: Samet Akcay <[email protected]> * Fix transforms for draem, dsr and rkde (#2324) Signed-off-by: Blaz Rolih <[email protected]> * Add check before loading metrics data from checkpoint (#2323) Add check before loading from checkpoint Signed-off-by: Blaz Rolih <[email protected]> Co-authored-by: Samet Akcay <[email protected]> * Add PIMO (#2329) * PIMO (#1726) * update Signed-off-by: jpcbertoldo <[email protected]> * test binclf curves numpy and numba and fixes Signed-off-by: jpcbertoldo <[email protected]> * correct som docstrings Signed-off-by: jpcbertoldo <[email protected]> * torch interface and tests Signed-off-by: jpcbertoldo <[email protected]> * torch interface and tests Signed-off-by: jpcbertoldo <[email protected]> * constants regrouped in dataclass as class vars Signed-off-by: jpcbertoldo <[email protected]> * result class was unneccesary for per_image_binclf_curve Signed-off-by: jpcbertoldo <[email protected]> * factorize function _get_threshs_minmax_linspace Signed-off-by: jpcbertoldo <[email protected]> * small docs fixes Signed-off-by: jpcbertoldo <[email protected]> * add pimo numpy version and test Signed-off-by: jpcbertoldo <[email protected]> * move validation Signed-off-by: jpcbertoldo <[email protected]> * add `shared_fpr_metric` option Signed-off-by: jpcbertoldo <[email protected]> * add pimo torch functional version and test Signed-off-by: jpcbertoldo <[email protected]> * add torchmetrics interface and test Signed-off-by: jpcbertoldo <[email protected]> * renames and put things in init Signed-off-by: jpcbertoldo <[email protected]> * validate inputs in result objects Signed-off-by: jpcbertoldo <[email protected]> * result objects to from dict and tests Signed-off-by: jpcbertoldo <[email protected]> * add save and load methods to result objects and test Signed-off-by: jpcbertoldo <[email protected]> * refactor validations and minor changes Signed-off-by: jpcbertoldo <[email protected]> * test result objects' properties Signed-off-by: jpcbertoldo <[email protected]> * minor refactors Signed-off-by: jpcbertoldo <[email protected]> * add missing docstrings Signed-off-by: jpcbertoldo <[email protected]> * minore vocabulary fix for consistency Signed-off-by: jpcbertoldo <[email protected]> * add per image scores statistics and test it Signed-off-by: jpcbertoldo <[email protected]> * refactor constants notation Signed-off-by: jpcbertoldo <[email protected]> * add stats tests and test it Signed-off-by: jpcbertoldo <[email protected]> * change the meaning of AUPIMO.num_thresh Signed-off-by: jpcbertoldo <[email protected]> * interface to format pairwise test results Signed-off-by: jpcbertoldo <[email protected]> * improve doc Signed-off-by: jpcbertoldo <[email protected]> * add optional `paths` to result objects and some minor fixes and refactors Signed-off-by: jpcbertoldo <[email protected]> * remove frozen from dataclasses and some done todos Signed-off-by: jpcbertoldo <[email protected]> * review headers Signed-off-by: jpcbertoldo <[email protected]> * doc modifs Signed-off-by: jpcbertoldo <[email protected]> * refactor `score_less_than_thresh` in `_binclf_one_curve_python` Signed-off-by: jpcbertoldo <[email protected]> * correct license comments Signed-off-by: jpcbertoldo <[email protected]> * fix doc Signed-off-by: jpcbertoldo <[email protected]> * numba as extra requirement Signed-off-by: jpcbertoldo <[email protected]> * refactor copyrights from jpcbertoldo Signed-off-by: jpcbertoldo <[email protected]> * remove from __future__ import annotations Signed-off-by: jpcbertoldo <[email protected]> * refactor validations names Signed-off-by: jpcbertoldo <[email protected]> * dedupe file path validation Signed-off-by: jpcbertoldo <[email protected]> * fix tests Signed-off-by: jpcbertoldo <[email protected]> * Add todo Signed-off-by: jpcbertoldo <[email protected]> * refactor enums Signed-off-by: jpcbertoldo <[email protected]> * only logger.warning Signed-off-by: jpcbertoldo <[email protected]> * refactor test imports Signed-off-by: jpcbertoldo <[email protected]> * refactor docs Signed-off-by: jpcbertoldo <[email protected]> * refactor some docs Signed-off-by: jpcbertoldo <[email protected]> * correct pre commit errors Signed-off-by: jpcbertoldo <[email protected]> * remove author tag Signed-off-by: jpcbertoldo <[email protected]> * add thrid party program Signed-off-by: jpcbertoldo <[email protected]> * Update src/anomalib/metrics/per_image/pimo.py * move HAS_NUMBA Signed-off-by: jpcbertoldo <[email protected]> * remove PIMOSharedFPRMetric Signed-off-by: jpcbertoldo <[email protected]> * make torchmetrics compute avg by dft Signed-off-by: jpcbertoldo <[email protected]> * pre-commit hooks corrections Signed-off-by: jpcbertoldo <[email protected]> * correct numpy.trapezoid Signed-off-by: jpcbertoldo <[email protected]> --------- Signed-off-by: jpcbertoldo <[email protected]> Co-authored-by: Samet Akcay <[email protected]> * ποΈ Remove numba (#2313) * remove numba Signed-off-by: Ashwin Vaidya <[email protected]> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <[email protected]> * add third-party-programs.txt Signed-off-by: Ashwin Vaidya <[email protected]> --------- Signed-off-by: Ashwin Vaidya <[email protected]> * ποΈ Remove unused methods (#2315) * remove numba Signed-off-by: Ashwin Vaidya <[email protected]> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <[email protected]> * remove all unused methods Signed-off-by: Ashwin Vaidya <[email protected]> --------- Signed-off-by: Ashwin Vaidya <[email protected]> * PIMO: Port Numpy β Torch (#2316) * remove numba Signed-off-by: Ashwin Vaidya <[email protected]> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <[email protected]> * remove all unused methods Signed-off-by: Ashwin Vaidya <[email protected]> * replace numpy with torch Signed-off-by: Ashwin Vaidya <[email protected]> --------- Signed-off-by: Ashwin Vaidya <[email protected]> * π¨Refactor methods across files (#2321) * remove numba Signed-off-by: Ashwin Vaidya <[email protected]> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <[email protected]> * remove all unused methods Signed-off-by: Ashwin Vaidya <[email protected]> * replace numpy with torch Signed-off-by: Ashwin Vaidya <[email protected]> * refactor code Signed-off-by: Ashwin Vaidya <[email protected]> * refactor move functional inside update remove path from the metric * Add changes from comments Signed-off-by: Ashwin Vaidya <[email protected]> --------- Signed-off-by: Ashwin Vaidya <[email protected]> * Remove model to model comparison (#2325) * rename to pimo Signed-off-by: Ashwin Vaidya <[email protected]> * minor refactor Signed-off-by: Ashwin Vaidya <[email protected]> * remove model to model comparison Signed-off-by: Ashwin Vaidya <[email protected]> * fix test Signed-off-by: Ashwin Vaidya <[email protected]> * PR comments Signed-off-by: Ashwin Vaidya <[email protected]> * Minor refactor Signed-off-by: Ashwin Vaidya <[email protected]> --------- Signed-off-by: Ashwin Vaidya <[email protected]> * PR comments Signed-off-by: Ashwin Vaidya <[email protected]> * Remove unused enums Signed-off-by: Ashwin Vaidya <[email protected]> * update doc strings Signed-off-by: Ashwin Vaidya <[email protected]> * update param names Signed-off-by: Ashwin Vaidya <[email protected]> * add aupimo basic usage tutorial notebook (#2330) * add aupimo basic usage tutorial notebook Signed-off-by: jpcbertoldo <[email protected]> * update scipy import Signed-off-by: jpcbertoldo <[email protected]> * add cite us Signed-off-by: jpcbertoldo <[email protected]> * minor Signed-off-by: jpcbertoldo <[email protected]> * modify texts and add illustration Signed-off-by: jpcbertoldo <[email protected]> * udpate working dir Signed-off-by: jpcbertoldo <[email protected]> --------- Signed-off-by: jpcbertoldo <[email protected]> --------- Signed-off-by: jpcbertoldo <[email protected]> Signed-off-by: Ashwin Vaidya <[email protected]> Co-authored-by: Joao P C Bertoldo <[email protected]> Co-authored-by: Samet Akcay <[email protected]> * Makes batch size dynamic (#2339) Made batch dimension of ONNX export dynamic when specifying input shape. * Add pimo tutorial advanced i (fixed) (#2336) * uset all padim features to make it deterministic Signed-off-by: jpcbertoldo <[email protected]> * add aupimo notebook advanced i Signed-off-by: jpcbertoldo <[email protected]> * update readme Signed-off-by: jpcbertoldo <[email protected]> * modify changelog Signed-off-by: jpcbertoldo <[email protected]> * correct readme Signed-off-by: jpcbertoldo <[email protected]> * correct again Signed-off-by: jpcbertoldo <[email protected]> * minor corrections Signed-off-by: jpcbertoldo <[email protected]> --------- Signed-off-by: jpcbertoldo <[email protected]> * Pimo tutorials/02 advanced ii (#2347) * uset all padim features to make it deterministic Signed-off-by: jpcbertoldo <[email protected]> * add aupimo notebook advanced i Signed-off-by: jpcbertoldo <[email protected]> * update readme Signed-off-by: jpcbertoldo <[email protected]> * modify changelog Signed-off-by: jpcbertoldo <[email protected]> * correct readme Signed-off-by: jpcbertoldo <[email protected]> * correct again Signed-off-by: jpcbertoldo <[email protected]> * minor corrections Signed-off-by: jpcbertoldo <[email protected]> * add aupimo notebook advanced ii (pimo curve and integration bounds) Signed-off-by: jpcbertoldo <[email protected]> * fix links Signed-off-by: jpcbertoldo <[email protected]> * correct change log Signed-off-by: jpcbertoldo <[email protected]> --------- Signed-off-by: jpcbertoldo <[email protected]> * Create epic.yaml * π¨ Update the issue templates (#2363) * Update epic.yaml * Update epic.yaml * Update epic.yaml * Update epic.yaml * Update task.yaml * Create user_story.yaml * Update epic.yaml * Pimo tutorials/03 advanced iii (#2348) * add aupimo notebook advanced iii (aupimo score of a random model) Signed-off-by: jpcbertoldo <[email protected]> * add cite us Signed-off-by: jpcbertoldo <[email protected]> * update notebooks readme Signed-off-by: jpcbertoldo <[email protected]> --------- Signed-off-by: jpcbertoldo <[email protected]> Co-authored-by: Samet Akcay <[email protected]> * π¨ Deprecate try import and replace it with Lightning's package_available (#2373) Replace try_import with lightnings package_available function Signed-off-by: Samet Akcay <[email protected]> * Refactor folder3d to avoid complex-structure (C901) issue (#2185) * Refactored-make_folder3d_dataset-ruff-error-C901 (#1926) Signed-off-by: sahusiddharth <[email protected]> * Simplify folder 3d dataset (#2184) --------- Signed-off-by: sahusiddharth <[email protected]> Co-authored-by: Siddharth Sahu <[email protected]> --------- Signed-off-by: dependabot[bot] <[email protected]> Signed-off-by: Samet Akcay <[email protected]> Signed-off-by: Blaz Rolih <[email protected]> Signed-off-by: jpcbertoldo <[email protected]> Signed-off-by: Ashwin Vaidya <[email protected]> Signed-off-by: sahusiddharth <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: BlaΕΎ Rolih <[email protected]> Co-authored-by: Ashwin Vaidya <[email protected]> Co-authored-by: Joao P C Bertoldo <[email protected]> Co-authored-by: Marcus Pertlwieser <[email protected]> Co-authored-by: Siddharth Sahu <[email protected]>
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