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    23 repositories

    • density_maintenance

      Public
      Active research repository for our work on understanding cell size regulation and cellular composition.
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • ecor_strains

      Public
      Clarion
      •
      Other
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • hplc-py

      Public
      A Python utility for the processing and quantification of chromatography data
      hplcanalytical-chemistrychromatography-analysis
      Python
      •
      GNU General Public License v3.0
      •5•30•1•0•Updated Sep 30, 2024Sep 30, 2024

    • cremerlab.github.io

      Public
      Source code for our website.
      SCSS
      •0•1•0•0•Updated May 23, 2024May 23, 2024

    • diurnal_growthvariations

      Public
      Simulation approch to better understand the growth and turnover of the human gut microbiota, depending on diurnal variations in nutrient supply and growth
      Jupyter Notebook
      •0•0•0•0•Updated May 22, 2024May 22, 2024

    • SSRM_Diversity

      Public
      Python
      •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • optogenetic_translation

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • fermentation_products

      Public
      Jupyter Notebook
      •
      Artistic License 2.0
      •0•0•0•0•Updated Jan 6, 2024Jan 6, 2024

    • microbiome-fermentation-products

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Dec 15, 2023Dec 15, 2023

    • phage_allocation

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Sep 18, 2023Sep 18, 2023

    • BIOS261

      Public
      BIOS261: Rigor and Reproducibility in Biological Research
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 11, 2023Sep 11, 2023

    • flux_parity

      Public
      Complete history of the manuscript "An Optimal Regulation of Fluxes Dictates Microbial Growth In and Out of Steady-State"
      systems-biologymicrobiologyphysiology
      HTML
      •
      MIT License
      •2•3•0•0•Updated Jun 17, 2023Jun 17, 2023

    • info

      Public
      All of the cremer lab info, all in one convenient spot
      0•0•0•0•Updated May 17, 2023May 17, 2023

    • ecoligy

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Apr 23, 2023Apr 23, 2023

    • BIO165

      Public
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•1•Updated Jan 11, 2023Jan 11, 2023

    • cremerlab-utils

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Apr 2, 2022Apr 2, 2022

    • useless_expression

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 21, 2022Feb 21, 2022

    • integrativemicrobiology

      Public
      0•0•0•0•Updated Jan 4, 2022Jan 4, 2022

    • lagtimemodeling

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 24, 2021Oct 24, 2021

    • ltee_diauxie

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 3, 2021May 3, 2021

    • swimming_analysis

      Public
      Analysis of movies to extract bacterial swimming behavior and statistics
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 14, 2019Aug 14, 2019

    • chemotaxis_imageanalysisexpansiondynamics

      Public
      To analyze expansion and growth dynamics of populations. File handling for Leica SP8 data export.
      Python
      •0•0•0•0•Updated Aug 14, 2019Aug 14, 2019

    • chemotaxis_simulation

      Public
      Python
      •
      GNU Lesser General Public License v3.0
      •3•6•0•0•Updated Aug 14, 2019Aug 14, 2019