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    50 repositories

    • retirement-notice

      Public
      Static site providing notice of the data portal retirement.
      CSS
      •0•0•0•0•Updated Jun 19, 2024Jun 19, 2024

    • dcc-docs

      Public
      User facing documentation for ICGC DCC at http://docs.icgc.org/
      CSS
      •1•6•1•4•Updated Feb 13, 2024Feb 13, 2024

    • dcc-portal

      Public
      Data portal for exploring and accessing data
      hacktoberfest
      HTML
      •
      Other
      •8•15•16•29•Updated Oct 30, 2023Oct 30, 2023

    • Daco2Ego

      Public
      Utility and service to load DACO list into Ego.
      Python
      •
      GNU General Public License v3.0
      •1•0•0•3•Updated May 30, 2023May 30, 2023

    • dcc-id

      Public
      ID system for ICGC projects
      Java
      •
      Other
      •5•1•0•2•Updated Sep 8, 2022Sep 8, 2022

    • dcc-repository

      Public
      Importer for the ICGC "Data Repository" feature which imports file metadata from various external data repositories.
      Java
      •
      Other
      •4•0•3•5•Updated Sep 1, 2022Sep 1, 2022

    • dcc-download

      Public
      Modules that allow the creation, download and maintenance of large portal data sets
      Java
      •
      Other
      •2•1•1•4•Updated Mar 31, 2022Mar 31, 2022

    • dcc-common

      Public
      Common modules for code reuse
      Java
      •
      Other
      •2•1•0•6•Updated Dec 14, 2021Dec 14, 2021

    • dcc-parent

      Public
      Common parent pom for module configuration reuse
      GNU General Public License v3.0
      •3•1•0•0•Updated Jul 6, 2021Jul 6, 2021

    • dcc-import

      Public
      Reference data importers
      etl
      Java
      •
      Other
      •4•1•1•0•Updated Oct 21, 2020Oct 21, 2020

    • ega-file-transfer

      Public
      1•1•2•0•Updated Sep 21, 2020Sep 21, 2020

    • ega-file-transfer-to-collab-jt

      Public
      JTracker workflow to transfer ICGC sequencing data from EGA to Cancer Genome Collaboratory
      Python
      •1•0•2•0•Updated Aug 31, 2020Aug 31, 2020

    • dckr_song_upload

      Public
      This docker image is used to upload to ICGC using SONG client during EGA transfer
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 28, 2020Aug 28, 2020

    • dcc-cm

      Public
      Configuration management and related automation
      Shell
      •
      Other
      •2•5•2•0•Updated Jan 9, 2020Jan 9, 2020

    • icgc-legacy-dictionary

      Public
      Backup of json
      Roff
      •0•1•0•0•Updated Dec 16, 2019Dec 16, 2019

    • k8s

      Public
      HCL
      •
      Other
      •0•1•0•0•Updated Oct 30, 2019Oct 30, 2019

    • Jukebox

      Public
      ✅ Customizations for JupyterHub and Jupyter notebooks.
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •1•0•1•0•Updated Oct 17, 2019Oct 17, 2019

    • icgc-python

      Public
      Python API for accessing ICGC Data
      Python
      •
      GNU General Public License v3.0
      •3•0•2•1•Updated Oct 3, 2019Oct 3, 2019

    • pcawg2-meta

      Public
      Metadata to support running PCAWG pipelines for PCAWG2 donors
      0•0•1•0•Updated Jul 12, 2019Jul 12, 2019

    • bwa-mem-wgs-aligner

      Public
      Python
      •0•0•1•0•Updated Jun 26, 2019Jun 26, 2019

    • dcc-release

      Public
      Second generation of the ICGC DCC release ETL built on Spark
      Java
      •
      Other
      •9•10•1•1•Updated Apr 8, 2019Apr 8, 2019

    • JTrackerTransferOperations

      Public
      Python
      •0•0•0•0•Updated Apr 3, 2019Apr 3, 2019

    • sbg-tools

      Public
      This is the home for reusable dockerized tools, which can be plugged into different workflows.
      0•0•0•1•Updated Mar 25, 2019Mar 25, 2019

    • SongUperations

      Public
      Python
      •0•0•0•0•Updated Mar 25, 2019Mar 25, 2019

    • pcawg-somatic-mutation-calling

      Public
      Python
      •0•2•0•1•Updated Mar 25, 2019Mar 25, 2019

    • pcawg-variant-calling-cgc

      Public
      Workflow to run PCAWG variant callers on CGC platform
      Python
      •0•0•0•1•Updated Mar 21, 2019Mar 21, 2019

    • dcc-iobio

      Public
      ICGC customized iobio containers for accessing ICGC cloud based files
      JavaScript
      •
      Other
      •2•2•0•0•Updated Nov 15, 2018Nov 15, 2018

    • icgconnect

      Public
      Python
      •0•1•0•0•Updated Oct 3, 2018Oct 3, 2018

    • jtracker

      Public
      JTracker – A 'track everything' solution for workflow authoring, sharing and execution.
      workflowbioinformatics
      Python
      •
      Apache License 2.0
      •0•4•0•0•Updated Apr 9, 2018Apr 9, 2018

    • ega-file-transfer-to-collab-5-jtracker

      Public
      Mirror of our internal git repo: http://142.1.177.124/jt-hub/ega-file-transfer-to-collab-5-jtracker
      0•0•0•0•Updated Mar 20, 2018Mar 20, 2018