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@pcdslab Parallel Computing and Data Science Lab (Saeed Lab)

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    37 repositories

    • PCDSLab.github.io

      Public template
      Website for the Parallel Computing and Data Science Lab (Saeed Lab) at FIU
      HTML
      •55•1•0•0•Updated Nov 7, 2024Nov 7, 2024

    • ProteoRift

      Public
      End-to-end machine-learning pipeline for peptide database search
      Jupyter Notebook
      •
      Other
      •2•0•0•1•Updated Nov 5, 2024Nov 5, 2024

    • MAESTRO

      Public
      An interconnected set of open source machine-learning models for large-scale mass spectrometry based omics analysis.
      Python
      •1•1•1•1•Updated Nov 5, 2024Nov 5, 2024

    • SpeCollate

      Public
      Jupyter Notebook
      •
      Other
      •1•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • empirical-seizure-study

      Public
      0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • GiCOPS

      Public
      HiCOPS & GiCOPS : Computational framework for peptide identification from MS data through accelerated database search
      C++
      •
      Other
      •1•1•1•0•Updated Sep 10, 2024Sep 10, 2024

    • UtilLLM_EPS

      Public
      Python
      •1•0•1•1•Updated Aug 23, 2024Aug 23, 2024

    • .github

      Public
      0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • ASD-DiagNet

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •16•28•0•0•Updated Jul 12, 2024Jul 12, 2024

    • SPERTL

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 23, 2024Jun 23, 2024

    • MLSPred-Bench

      Public
      MLSPred-Bench: Reference EEG Benchmark for Prediction of Epileptic Seizures
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • PVTAD

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Apr 24, 2024Apr 24, 2024

    • Graph-DOM

      Public
      Graph-DOM is a tool to analyze comprehensive fragmentation data for dissolved organic matter (DOM) using graph algorithms.
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Feb 19, 2024Feb 19, 2024

    • ASD-SAENet

      Public
      Python
      •
      GNU General Public License v3.0
      •2•3•2•0•Updated Jan 9, 2024Jan 9, 2024

    • mspconverter

      Public
      A package to convert tandem mass spectra files from MSP to MGF format
      Python
      •0•2•0•0•Updated Dec 17, 2023Dec 17, 2023

    • ASD-DiagNet-Confounds

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • specollate-page

      Public
      Webpage for SpeCollate
      HTML
      •
      Other
      •0•0•0•0•Updated Jun 23, 2023Jun 23, 2023

    • Instruction_roofline_scripts

      Public
      Instruction Roofline Scripts for GiCOPS and ADEPT
      Python
      •3•0•0•0•Updated Oct 29, 2022Oct 29, 2022

    • slmindex

      Public
      SLM-Transform: Fast and Memory-Efficient MS/MS Spectra Indexing for Peptide Search in Mass-Spectrometry based Proteomics
      C
      •
      GNU General Public License v3.0
      •0•5•0•0•Updated Aug 5, 2022Aug 5, 2022

    • TurboBC

      Public
      A memory efficient and highly scalable GPU-based set of Betweenness Centrality (BC) algorithms in the language of linear algebra.
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 7, 2021Sep 7, 2021

    • TurboBFS

      Public
      A highly scalable GPU-based set of top-down and bottom-up BFS algorithms in the language of  linear algebra.
      C
      •
      GNU General Public License v3.0
      •3•2•0•0•Updated May 20, 2021May 20, 2021

    • MSREDUCE

      Public
      source code for MSREDUCE
      Java
      •
      GNU General Public License v3.0
      •2•1•1•0•Updated Feb 8, 2021Feb 8, 2021

    • MaSS-Simulator

      Public
      source for the MaSS-Simulator
      Java
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Sep 14, 2020Sep 14, 2020

    • Fast-GPU-PCC

      Public
      Cuda
      •
      GNU General Public License v3.0
      •2•7•0•0•Updated Apr 25, 2020Apr 25, 2020

    • Auto-ASD-Network

      Public
      Python
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Mar 25, 2020Mar 25, 2020

    • gpu-sfft

      Public
      The implementation of the GPU-SFFT algorithm
      Cuda
      •
      GNU General Public License v3.0
      •5•7•0•2•Updated Dec 16, 2019Dec 16, 2019

    • lbdslim

      Public
      Load Balancing Algorithm for Distributed SLM-Transform (DSLIM)
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 8, 2019Jun 8, 2019

    • GPU-DFC

      Public
      Cuda
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Feb 9, 2019Feb 9, 2019

    • J-Eros

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 9, 2019Feb 9, 2019

    • SLMIndexBeta

      Public
      The implementation of SLM-Index v0.7beta integrated into Comet-MS v2016.03 codebase
      Objective-C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 1, 2018Dec 1, 2018