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    12 repositories

    • simpsonlab.github.io

      Public
      SCSS
      •
      Other
      •8•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • createivf

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 13, 2023Jan 13, 2023

    • circos-plots

      Public
      A set of scripts to create files required to generate a circos plot for genomic data
      Python
      •0•1•0•0•Updated Jan 6, 2023Jan 6, 2023

    • cookiecutter-py

      Public
      A cookiecutter template for Python packages
      Python
      •1•0•0•0•Updated Dec 15, 2022Dec 15, 2022

    • cookiecutter-snakemake

      Public
      A cookiecutter template for snakemake projects used in the Simpson Lab
      Python
      •1•1•0•0•Updated Jul 29, 2022Jul 29, 2022

    • mbtools

      Public
      Rust
      •
      MIT License
      •3•0•0•0•Updated Jun 2, 2022Jun 2, 2022

    • ncov-parser

      Public
      Python
      •
      MIT License
      •3•2•0•0•Updated May 5, 2022May 5, 2022

    • ncov-qa

      Public
      Quality assessment workflow for COVID-19
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 26, 2022Apr 26, 2022

    • ncov-primers

      Public
      Python
      •0•0•0•0•Updated Apr 29, 2021Apr 29, 2021

    • ncov-sim

      Public
      A Python package for sequence simulation for the nCoV project
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 26, 2020Jun 26, 2020

    • preqclr

      Public
      preqclr is a software tool that reports on quality for long read sequencing data without the use of a reference genome.
      bioinformaticslong-readpacbiooxford-nanoporeminimap2quality
      C++
      •
      MIT License
      •2•4•0•0•Updated Sep 10, 2018Sep 10, 2018

    • nanopolish

      Public
      Signal-level algorithms for MinION data
      C++
      •
      MIT License
      •159•0•0•0•Updated Sep 5, 2015Sep 5, 2015