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Rc/5.11.0 #418

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Jul 4, 2024
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8 changes: 4 additions & 4 deletions Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -70,7 +70,7 @@ _ping_song_server:
--retry 5 \
--retry-delay 0 \
--retry-max-time 40 \
--retry-connrefuse \
--retry-connrefused \
'http://localhost:8080/isAlive'
@echo ""

Expand Down Expand Up @@ -192,10 +192,10 @@ rebuild-server: clean-mvn package
rebuild-all: clean-mvn package
@$(DOCKER_COMPOSE_CMD) build score-server score-client

# Start ego, song, and object-storage.
# Start keycloak, song, and object-storage.
start-deps: _setup package
@echo $(YELLOW)$(INFO_HEADER) "Starting dependencies: ego, song and object-storage" $(END)
@$(DC_UP_CMD) ego-api song-server object-storage
@echo $(YELLOW)$(INFO_HEADER) "Starting dependencies: keycloak, song and object-storage" $(END)
@$(DC_UP_CMD) keycloak-server song-server object-storage

# Start score-server and all dependencies. Affected by DEMO_MODE
start-score-server: _setup package start-deps _setup-object-storage
Expand Down
88 changes: 53 additions & 35 deletions docker-compose.yml
Original file line number Diff line number Diff line change
@@ -1,31 +1,36 @@
version: '3.7'
services:
ego-api:
image: "overture/ego:3.1.0"
keycloak-server:
image: docker.io/bitnami/keycloak:22
environment:
SERVER_PORT: 8080
SPRING_DATASOURCE_URL: jdbc:postgresql://ego-postgres:5432/ego?stringtype=unspecified
SPRING_DATASOURCE_USERNAME: postgres
SPRING_DATASOURCE_PASSWORD: password
SPRING_FLYWAY_ENABLED: "true"
SPRING_FLYWAY_LOCATIONS: "classpath:flyway/sql,classpath:db/migration"
SPRING_PROFILES: demo, auth
expose:
- "8080"
- KC_DB=postgres
- KC_DB_URL=jdbc:postgresql://keycloak-postgresql/bitnami_keycloak
- KC_DB_USERNAME=bn_keycloak
# default expiration days of apiKeys is 365
# - APIKEY_DURATION_DAYS=365
ports:
- "9082:8080"
command: java -jar /srv/ego/install/ego.jar
depends_on:
- ego-postgres
ego-postgres:
image: postgres:9.5
- keycloak-postgresql
volumes:
- type: bind
source: ./docker/keycloak-init/data_import
target: /opt/bitnami/keycloak/data/import
command:
- /bin/bash
- -c
- |
curl -sL https://github.com/oicr-softeng/keycloak-apikeys/releases/download/1.0.1/keycloak-apikeys-1.0.1.jar -o /opt/bitnami/keycloak/providers/keycloak-apikeys-1.0.1.jar
kc.sh start-dev --import-realm
keycloak-postgresql:
image: docker.io/bitnami/postgresql:11
environment:
- POSTGRES_DB=ego
- POSTGRES_PASSWORD=password
# ALLOW_EMPTY_PASSWORD is recommended only for development.
- ALLOW_EMPTY_PASSWORD=yes
- POSTGRESQL_USERNAME=bn_keycloak
- POSTGRESQL_DATABASE=bitnami_keycloak
expose:
- "5432"
volumes:
- "./docker/ego-init:/docker-entrypoint-initdb.d"
ports:
- "9444:5432"
object-storage:
Expand All @@ -36,7 +41,7 @@ services:
MINIO_SECRET_KEY: minio123
command: server /data
healthcheck:
test: ["CMD", "curl", "-f", "http://localhost:9000/minio/health/live"]
test: [ "CMD", "curl", "-f", "http://localhost:9000/minio/health/live" ]
interval: 30s
timeout: 20s
retries: 3
Expand All @@ -61,11 +66,15 @@ services:
S3_ACCESSKEY: minio
S3_SECRETKEY: minio123
S3_SIGV4ENABLED: "true"
AUTH_SERVER_URL: http://ego-api:8080/o/check_api_key/
SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_JWK_SET_URI: http://keycloak-server:8080/realms/myrealm/protocol/openid-connect/certs
AUTH_SERVER_URL: http://keycloak-server:8080/realms/myrealm/apikey/check_api_key/
AUTH_SERVER_TOKENNAME: apiKey
AUTH_SERVER_CLIENTID: score
AUTH_SERVER_CLIENTSECRET: scoresecret
AUTH_SERVER_SCOPE_STUDY_PREFIX: score.
AUTH_SERVER_CLIENTID: system
AUTH_SERVER_CLIENTSECRET: systemsecret
AUTH_SERVER_PROVIDER: keycloak
AUTH_SERVER_KEYCLOAK_HOST: http://keycloak-server:8080
AUTH_SERVER_KEYCLOAK_REALM: myrealm
AUTH_SERVER_SCOPE_STUDY_PREFIX: PROGRAMDATA.
AUTH_SERVER_SCOPE_UPLOAD_SUFFIX: .WRITE
AUTH_SERVER_SCOPE_DOWNLOAD_SUFFIX: .READ
AUTH_SERVER_SCOPE_DOWNLOAD_SYSTEM: score.WRITE
Expand All @@ -86,7 +95,6 @@ services:
depends_on:
- object-storage
- song-server
- ego-api
volumes:
- "./docker/scratch/storage-server-logs:/opt/dcc/storage_server_logs"
score-client:
Expand All @@ -95,7 +103,7 @@ services:
dockerfile: "$DOCKERFILE_NAME"
target: client
environment:
ACCESSTOKEN: f69b726d-d40f-4261-b105-1ec7e6bf04d5
ACCESSTOKEN: 07a5a12e-a85f-4248-a9a1-851a8062b6ac
METADATA_URL: http://song-server:8080
STORAGE_URL: http://score-server:8080
JAVA_TOOL_OPTIONS: -agentlib:jdwp=transport=dt_socket,address=*:5005,server=y,suspend=n
Expand All @@ -107,7 +115,7 @@ services:
command: bin/score-client
user: "$MY_UID:$MY_GID"
song-db:
image: "postgres:9.6"
image: "postgres:11.1"
environment:
POSTGRES_DB: song
POSTGRES_USER: postgres
Expand All @@ -118,6 +126,11 @@ services:
- "12345:5432"
volumes:
- "./docker/song-db-init:/docker-entrypoint-initdb.d"
healthcheck:
test: [ "CMD-SHELL", "pg_isready -U postgres" ]
interval: 15s
timeout: 15s
retries: 5
aws-cli:
image: "mesosphere/aws-cli:latest"
environment:
Expand All @@ -127,18 +140,23 @@ services:
volumes:
- "./docker/object-storage-init/data/oicr.icgc.test/data:/score-data:ro"
song-server:
image: overture/song-server:4.2.2
image: ghcr.io/overture-stack/song-server:438c2c42
environment:
SERVER_PORT: 8080
SPRING_PROFILES_ACTIVE: "prod,secure,default"
AUTH_SERVER_URL: http://ego-api:8080/o/check_token/
AUTH_SERVER_CLIENTID: song
AUTH_SERVER_CLIENTSECRET: songsecret
AUTH_SERVER_SCOPE_STUDY_PREFIX: song.
SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_JWK_SET_URI: http://keycloak-server:8080/realms/myrealm/protocol/openid-connect/certs
AUTH_SERVER_INTROSPECTIONURI: http://keycloak-server:8080/realms/myrealm/apikey/check_api_key/
AUTH_SERVER_TOKENNAME: apiKey
AUTH_SERVER_CLIENTID: system
AUTH_SERVER_CLIENTSECRET: systemsecret
AUTH_SERVER_PROVIDER: keycloak
AUTH_SERVER_KEYCLOAK_HOST: http://keycloak-server:8080
AUTH_SERVER_KEYCLOAK_REALM: myrealm
AUTH_SERVER_SCOPE_STUDY_PREFIX: PROGRAMDATA.
AUTH_SERVER_SCOPE_STUDY_SUFFIX: .WRITE
AUTH_SERVER_SCOPE_SYSTEM: song.WRITE
SCORE_URL: http://score-server:8080
SCORE_ACCESSTOKEN: f69b726d-d40f-4261-b105-1ec7e6bf04d5
SCORE_ACCESSTOKEN: 07a5a12e-a85f-4248-a9a1-851a8062b6ac
MANAGEMENT_SERVER_PORT: 8081
ID_USELOCAL: "true"
SPRING_DATASOURCE_USERNAME: postgres
Expand All @@ -149,8 +167,8 @@ services:
ports:
- "8080:8080"
depends_on:
- song-db
- ego-api
song-db:
condition: service_healthy
volumes:
- "./docker/scratch/song-server-logs:/opt/dcc/server_logs"

Expand Down
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