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Hi, I tried to run hint cnv and got these error messages.
open: No such file or directory
Traceback (most recent call last):
File "/data2/home/song7602/Tools/HiNT/bin/hint", line 202, in
main()
File "/data2/home/song7602/Tools/HiNT/bin/hint", line 194, in main
cnvrun(argparser)
File "/data2/home/song7602/Tools/HiNT/HiNT/runhint.py", line 86, in cnvrun
chroms,regressionFileAllchroms,regressionChromFilesInfo = prepareData(opts.name,opts.outdir,opts.referencedir,chromlf,rowSumFilesInfo,binsize,GCPercent_1kb,mappablity_track,restrictionSites) #Prepare the other data Information for regression
File "/data2/home/song7602/Tools/HiNT/HiNT/prepare_regression.py", line 167, in prepareData
mapscore = getmappability(mappablity_track, chrom, 1, chromLength, resolution)
File "/data2/home/song7602/Tools/HiNT/HiNT/prepare_regression.py", line 42, in getmappability
tb = tabix.open(mappablity_track)
tabix.TabixError: Can't open the index file.
is mappability_track file required as an input for running hint cnv? and if it is, which path should it be located in? at reference genome directory?
The text was updated successfully, but these errors were encountered:
Hi, I tried to run hint cnv and got these error messages.
open: No such file or directory
Traceback (most recent call last):
File "/data2/home/song7602/Tools/HiNT/bin/hint", line 202, in
main()
File "/data2/home/song7602/Tools/HiNT/bin/hint", line 194, in main
cnvrun(argparser)
File "/data2/home/song7602/Tools/HiNT/HiNT/runhint.py", line 86, in cnvrun
chroms,regressionFileAllchroms,regressionChromFilesInfo = prepareData(opts.name,opts.outdir,opts.referencedir,chromlf,rowSumFilesInfo,binsize,GCPercent_1kb,mappablity_track,restrictionSites) #Prepare the other data Information for regression
File "/data2/home/song7602/Tools/HiNT/HiNT/prepare_regression.py", line 167, in prepareData
mapscore = getmappability(mappablity_track, chrom, 1, chromLength, resolution)
File "/data2/home/song7602/Tools/HiNT/HiNT/prepare_regression.py", line 42, in getmappability
tb = tabix.open(mappablity_track)
tabix.TabixError: Can't open the index file.
is mappability_track file required as an input for running hint cnv? and if it is, which path should it be located in? at reference genome directory?
The text was updated successfully, but these errors were encountered: