Skip to content

Issues: parklab/HiNT

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

21 Open 3 Closed
21 Open 3 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Log2 per bin
#27 opened Sep 26, 2024 by IsMM15
TypeError: 'numpy.float64' object cannot be interpreted as an integer
#26 opened May 11, 2024 by stutimishra7
ValueError: row index exceeds matrix dimensions
#24 opened Nov 9, 2023 by walidabualafia
1
How to make reference files for other species
#23 opened May 10, 2023 by xinghua1001
tabix.TabixError: Can't open the index file.
#22 opened Oct 18, 2022 by Yousuk-Song
Error running CNV from .hic files with hg38
#21 opened Sep 7, 2022 by ksmetz
Always report ERROR: path to the matrixfile is not valid.
#20 opened Sep 11, 2021 by wzhang42
3
Errors in installing HiNT via conda
#19 opened Sep 10, 2021 by Kurotakid
1
background matrix
#18 opened Sep 9, 2021 by distilledchild
2
Hint reference and background files not available anymore.
#16 opened May 30, 2021 by mblanche
3
Deprecated .ix Pandas method causes hint cnv to fail.
#14 opened Feb 26, 2021 by jrhawley
1
Is background matrices necessary?
#13 opened Oct 22, 2020 by JiaoLaboratory
1
MemoryError
#12 opened Oct 5, 2020 by ningwei-wei
Can HiNT be used for genomes of other species, like in plants?
#10 opened May 30, 2020 by clementmo
error finding Hint module
#9 opened May 29, 2020 by mtegtmey
Enzyme used in Hi-C experiment
#8 opened Feb 27, 2020 by ckj199591
1
KeyError: 'chrom' using your docker for 'hint tl' with cooler input
#7 opened Feb 7, 2020 by cchlanger
2
HiNT TL with cooler output
#5 opened Feb 4, 2020 by snowsite
A bug like code injection if prefix name contains underline
#3 opened Dec 19, 2019 by omegahh
1
hint cnv -f juicer: TypeError: 'int' object is not subscriptable
#2 opened Nov 11, 2019 by sidiropoulos
2
Bug? IndexError: list index out of range
#1 opened Oct 14, 2019 by areyesq89
1
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.