Lira vvedit #2
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Lira vvedit #2
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…tatements made to diagnose the source of empty linkage.rda leading to an errored-out compare command
…or the mouse genome; still need to understand why pop.ref.freq is going to 1 even for the pseudobulk
…d_mouse VCF, so pop.ref.freq for bulk was turning up empty during vcf-info.txt creation in the 'lira plink' command for the bulk sample; subsequently, all entries in the bulk VCF were being filtered out of the site.frame object invoked in the 'lira compare' command
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