This is a super repo that brings together several Git repos of TVB, intended to make it easier to get started with TVB.
There are two usage scenarios: 1) use only the official repos for TVB 2) use your own forks of those repos.
In the first case, you should fork this repo and clone it, e.g.
(replace user by your GitHub username):
git clone [email protected]:user/tvb-pack tvb
cd tvb
git submodule init
git submodule updateBe patient, in some cases the repos are quite large.
In the second case, you'll need to additionally, for each repo
where you have your own fork, modify the .gitmodules file correctly
just after cloning tvb-pack and
before performing the submodule commands in the listing above.
For each submodule, if you plan to make changes, make sure to checkout the master or trunk branch first.
In case you have your own forks of each of the submodules, running
scripts/update-origins.sh username
will handle updating .gitmodules correctly.
If the subsequent git submodule update produces errors like
fatal: reference is not a tree: 03dc58f782c7ac4fe65cecbb9d459e95d8efff2c
Unable to checkout '03dc58f782c7ac4fe65cecbb9d459e95d8efff2c' in submodule path 'matlab'
then you'll need to update your forks from upstream and then re-run
git submodule update.
Additionally, if you wish to have access to the upstream repo, i.e.
(the-virtual-brain/tvb-*) you'll need to add this explicitly in
the submodule.
Lastly, if you merge from upstream/tvb-pack, you may have to update
.gitsubmodules to reflect your forks. We'll setup a script to make
this easier.
Create a TVB-ready virtual environment with all the necessary packages with
scripts/mkenv.sh my_env_path
Then, in order to activate it and place each of the submodule's contents in the Python path
source scripts/env.sh my_env_path
When you modify files tracked by the tvb-pack repo, use Git as
per usual. If you make changes to a submodule, you'll need to cd
into the submodule, Git your changes with respect to the submodule's
repository, cd up to the tvb-pack directory and update tvb-pack's
version of the submodule.
More details can be found at the Git SCM book's description of Git submodules.