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petermr / CEVOpen Public

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petermr edited this page Jan 3, 2022 · 1 revision

Installation and use of Pandas for annotating Terpene documents and Images

Toggle table of contents Pages 65

Home
Activities Summary: Anuv
Agenda Setup
Aroma the Game
CEVOpen Blog Ideas
CEVOpen Intern meetings 2022
Classification of Terpene Biosynthesis
Coding Session Records: From 31st August
Coding Sessions: Meeting Record
crop5
Data preprocessing and applying Machine learning to extract information from the papers
Data Visualization Strategies
Dictionary eoActivity
Dictionary eoPlant
Dictionary eoplant_part
Dictionary eoPlantCompound
Dictionary Invasive_species
Dictionary Plant Secondary Metabolites
Dictionary: Gene
Dictionary: Overview
Dictionary: plant_genus
Dictionary: priorities and owners
Documentation for docanalysis
Five Minute Search, Citizen Science, and Guides
Flash Forward Workshop
GENE : TPS
Gold Standard (Materials and Methods): plant_parts
GoldStandard: Abstracts of oil26
Ideas: Video Presentation
Ideas: Webpage for CEVOpen
INI file setup
Intern Dictionaries
Interns and Roles
KARYA Intern Projects
Machine Analysis of the phytochemical literature on essential oil compounds
Meeting record for 15th Dec 2021
Meeting Records: From 29 July
Mini Project: Phytochemical ontologies for analyzing the literature on essential oils
Mini Project: “Semantic analysis of the literature on Plant Invasive Species”
Miniproject: Activity
Miniproject: Chemistry (Chemotype)
Miniproject: Genes and Genotypes
Miniproject: Invasive species
Miniproject: Machine Learning
Our Project and Machine Learning
Outreach
Outreach: Open Science Values and Practice
Pandas
Project Management
pyami: config files
Rules for Classification of Named terpene pathway
Rules for Classification of terpene pathway
Scoping through TPS Corpus
Semantic analysis of the Literature on essential oils from different part of plants with reported medicinal activity
Smoke test for pyami and py4ami
Software: installation
summary of dictionary plantcompound with minicorpus
Summary: Dictionary plant_part
Tasks for Interns on Probation
Testing dictionaries against corpus
Testing of plant_part dictionary
THESIS strategy
Toolkit
Updating dictionaries for more entries
Volunteering @CEVOpen

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