Fix user for binding tests #96
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I observed that I believe that at an earlier point in time I do not know, when we actually introduced changes that broke compatibility with pip 9.0.1. I am also not 100% sure whether we should try to make the python bindings compatible with pip 9.0.1, again, or whether the current state is fine (for sure running ❓ Any opinions on this question ❓ I am currently investigating the situation if I use Ubuntu 19.04. Edit: See #97 |
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@shkodm Something else seems not to work with the runner scripts: https://travis-ci.org/precice/systemtests/jobs/586477760#L445-L452 |
…king correctly." This reverts commit 40d6daa.
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On Ubuntu 1904, we can actually use the pip provided via apt. See #97 |
This was referenced Sep 18, 2019
shkodm
approved these changes
Sep 18, 2019
Nice catch. I will fix that. |
fsimonis
approved these changes
Dec 2, 2019
Eder-K
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Jan 15, 2020
* Update travis job name for Bindings * Add `allowed_failures` section to travis.yml Also adds the currently failing Ubuntu1804.sudo.mpich job to this section. For a job to be allowed to fail, it must be added to both the `include` and `allowed_failures` sections. A failure of such a job will not cause subseqent stages to be cancelled. * Initial commit to target specific tutorial branch for systemtest * Add launch argument to specify systemtests branch Allows requests to run on a specific branch of the systemtests repository instead of the default master branch * Adding input parameters to commands in docker-compose.yml * Fix docker username on login (#109) * Fix custom tags for adapter images #109 Closes #109 * Initial commit to target specific tutorial branch for systemtest * Add launch argument to specify systemtests branch Allows requests to run on a specific branch of the systemtests repository instead of the default master branch * Adding input parameters to commands in docker-compose.yml * Improve log header info (#107) * Improve automatic commit messages (#106) * New referenceOutput for fe-fe.Ubuntu1804.home * Removing all changes from trigger_systemtests.py for customised testing * Reverting more changes done for customised testing * Removing whitespace in trigger file * Fix dimension setting for reference data * Print build ID when systemtest is triggered (#105) Closes #105 * Print build number instead of build ID (#105) * Update job title to explain failure tolerance * Match job titles in include and allow_failures * Fix travis job list * Fix ubuntu1804.home tag * Use deployment instead of `after_success` (#116) Clean up travis structure Add documentation for adding tests and handling deploy Closes #103 * Only specify job name in `allow_failures` (#117) Closes #117 [skip travis] * Pull from repository before pushing (#118) Issue a `git pull --rebase` before pushing to precice_st_output. This should help scripts erroring due to missing commits in local version. Closes #118 * use branch develop as default for all tests * remove old python bindings. Update tests to only use new bindings * Remove python_future * Fix user for binding tests (#96) * Apply tests to python bindings in precice/python-bindings (#133) * replace installation of python bindings from precice/precice with bindings from precice/python-bindings * directly use repository address for pip3 install, avoids cloning * Fix fe-fe test by adding cd to user directory * Allow failure for PETSc * Allow failure for nutils <-> OpenFOAM. #132 * use DOCKER_USERNAME, where it is appropriate * Use Ubuntu18.04 for Nutils-OF test (#132) * remove old python bindings. Update tests to only use new bindings * trigger CI * Remove python_future * use Ubuntu 18.04, don't install enum34 * Update name of test and folder * add ubuntu 18.04 version of OF adapter * trigger CI * fix syntax error * Add output for better logs * use Ubuntu18.04 and OpenFOAM5 for Solver and Adapter * update reference results * Change order to reduce diff * Use OF5 for creation of reference results * add debug output * Use reference results from precice_st_output (#142) * Remove debugging output * update installation procedure for python bindings * use precice Repository * Fix folder creation wrt user rights * Use precice repository and fix users * Navigate to correct folder * Navigate to correct folder and run correct command Co-authored-by: Konrad Eder <[email protected]> Co-authored-by: Ishaan Desai <[email protected]> Co-authored-by: David Schneider <[email protected]>
Eder-K
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May 5, 2020
* use branch develop as default for all tests * remove old python bindings. Update tests to only use new bindings * Remove python_future * Fix user for binding tests (#96) * Apply tests to python bindings in precice/python-bindings (#133) * replace installation of python bindings from precice/precice with bindings from precice/python-bindings * directly use repository address for pip3 install, avoids cloning * Fix fe-fe test by adding cd to user directory * Allow failure for PETSc * Allow failure for nutils <-> OpenFOAM. #132 * use DOCKER_USERNAME, where it is appropriate * Use Ubuntu18.04 for Nutils-OF test (#132) * remove old python bindings. Update tests to only use new bindings * trigger CI * Remove python_future * use Ubuntu 18.04, don't install enum34 * Update name of test and folder * add ubuntu 18.04 version of OF adapter * trigger CI * fix syntax error * Add output for better logs * use Ubuntu18.04 and OpenFOAM5 for Solver and Adapter * update reference results * Change order to reduce diff * Use OF5 for creation of reference results * add debug output * Use reference results from precice_st_output (#142) * Remove debugging output * Fix tests failing due to no output (#148) * Remove non-tests temporarily * Remove log surpression * Remove -d argument` * Fix replacement of xml element * nutils-of: Fix replacement of xml element (#149) * Fix of-of and of-of_np (#150) * of-of: Fix replacement of xml element * of-of_np: Fix replacement of xml element * Replace post-processing with acceleration using sed * Replace post-processing with acceleration using sed * Revert "Replace post-processing with acceleration using sed" This reverts commit 2460f9a. * Revert "Replace post-processing with acceleration using sed" This reverts commit 832ce4a. * escapte double quotes * Escape quotes Co-authored-by: Konrad Eder <[email protected]> * Fix Calculix-OpenFOAM (#153) Update the locally stored config file according to tutorials#60 * Fix SU2-Calculix (#152) * Update configuration filename * Run silent_compose in detached mode * Revert '-d' argument adding * Redirect ccx output to logfile * Redirect ccx output to null * Fix dealii-of and ccx-of_fsi [PETSc] (#154) * Update sed insertion according to tutorials#60 * Update config.xml names for of-ccx.FSI.petsc * Surpress of-adapter output * Fix participant name * Remove output surpression * Restore silent functionality * Add optional debug argument * Add verbose optional argument * Escape dots * Delay of container start * Run nutils-of in verbose mode * Add success message * Fix typo * Add PETSc of-ccx to allowed failures * Update PETSc of-ccx name * Remove line Co-authored-by: Benjamin Rüth <[email protected]> * Fix nutils-of (#157) * Remove sleep command * Use exit codes for success as well * Add tests for bindings on Ubuntu 18.04 (#129) * remove old python bindings. Update tests to only use new bindings * trigger CI * Add tests for bindings on Ubuntu 18.04 * Revert "Add tests for bindings on Ubuntu 18.04 (#129)" (#159) * Update solverdummy location (#162) * Install Eigen from source for Ubuntu 16.04 (#163) * Identify requests from TravisCI website (#165) * Remove test for preCICE package Ubuntu 16.04 * Add installation of pkg-config (#166) 72a0bd7 switched from installing eigen via apt to installing eigen from source. This results in also not installing pkg-config that is a dependency of eigen. Therefore we now have to individually install pkg-config. Otherwise builds under Ubuntu16.04 relying on pkg-config will fail. * Restructure tools and bindings (#164) * Update path of solverdummies. Was changed in precice/precice#630 from tools/solverdummies to examples/solverdummies. * Update use new repository fortran-module for f2003 solverdummy and corresponding bindings Co-authored-by: Gerasimos Chourdakis <[email protected]> * Allow failure for adapters depending on PETSc * Fix typo * Fix Test_bindings * Change timestep-length to time-window-size * Adapt CMake variables for preCICE v2 (#167) See precice/precice#609 * Add system_testing.py example * Update reference results for su2-ccx test case (#172) * Update column names of reference files (#168) * Update headers for fe-fe test * provoke test failure with wrong reference * Revert "provoke test failure with wrong reference" This reverts commit 90ff76e. * Update column names for fe-fe 1804 * Fix md link * Remove .gitkeep * Update column names * Remove string filter * Update column names * Add missing spaces * Add spacing * Restore filtering * reintroduce whitespace errors to make tests succeed Co-authored-by: Konrad Eder <[email protected]> * Update openfoam-adapter in accordance with config changes (#174) * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Remove preCICe builds * Print wmake.log * Upgrade to OF5 * Fix typo * Update to OF5 * Update reference files for openfoam5 * Update config path manipulation * Update referenceOutput for OF5 * Update referenceOutput for OF5 * Readd preCICE building * Add python script for building images and pushing them (#131) * add system tests for cplscheme * add cplscheme test * run cplscheme test as local test * use Ubuntu 18.04 as base image * Use system_testing.py instead of local_test.py Changed this, since this is the correct way to do it. local_test.py is only meant for local tests. I had to add an additional build stage that uses the debugMasterSockets branch on the preCICE main repository. * Fix indentation * Fix --build-arg and add a Ubuntu18.04 build * first draft solution for #77 * roll out changes to all base images * remove default docker username to force user to provide it and avoid inconsistencies * remove old python bindings. Update tests to only use new bindings * trigger CI * add argument to switch petsc on/off * remove unrelated change * remove unrelated files * modify tag depending on petsc * Factor out tag composition * Add script for pushing * Use benjaminrueth and push_base.py * Fix and document tagging * temporarily allow failure * Use a more explicit name for script * Extract features in python scripts. Introduces some code duplication, but is more flexible. Code duplication will be removed as soon as #137 is solved. * fix error * Use list to keep track of features, add petsc as feature to list for better consistency * use python script for building and pushing adapters * Fix syntax errors * Use dict instead of list This is a partial remedy for the problem mentioned in #131 (comment) * Update push_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update push_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * use dict.get for less verbose code * Fix error * Filter away None * Use less verbose approach Co-authored-by: Konrad Eder <[email protected]> * Overhaul pushing to precice_st_output (#147) * Add file * Replace pushing script * Add pull --rebase to final push * Allow -t, -s arguments for now * Add readme to job folders * Format bash commands * Fix variable * Comment out unneeded functions * Add pushing failsafe * Improve commit msg * Fix function import * Improve README generation * Fix parenthesis * Fix formatting * Fix variable * Add wrapping quotes * Improve readme generation * Fix indents * Fix word * Add message after test success * Only run tests * Replace deploy with after_success * Update push command structure * Add log pushing * Add log pushing * Add logging command * Fix indent * Fix variable name * Fix variable name again * Fix import * Fix variable name * Rename logfile * Rename log file * Make output files optional * Formatting * Fix variable name * Fix var name * Fix name * Uncomment mkdir line * Adjust commit msg building * Add debug print * Add debug prints * Compare with string instead of integer * Enable verbose output * Add Logs to ignored files * Fix base selection * Reuse of container delay * Revert travis xml to original * Move test templates into separate directory * Use jinja for readme templating * Move test templates into separate directory * Move test templates into separate directory * Add missing logs msg * Add missing log message * Add general information * Check if output is enabled * Remove comment block * Compare text columns as well * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Remove preCICe builds * Print wmake.log * Upgrade to OF5 * Fix typo * Add branch info * Add branch info * Remove old pushing script * Update to OF5 * Fix line * Install Jinja2 * Fix path * Fix compare script * Enable output for OF tests * Update reference files for openfoam5 * Update config path manipulation * Update referenceOutput for OF5 * Only run tests * Rename nutils test * Revert compare script to develop version * Remove sleep command * Restore travis jobs * Fix variable name * Insert job name in folder name instead * Set default branch to master * Move job name into commit msg * Update reference data for of-ccx_fsi PETSc (#177) * Update reference data * Remove 0.orig * Update folder naming * Identify PETSc feature * Build preCICE with Debug (#175) * Only install minimal python depdendencies manually * Update to newest pip version * Use pyproject.toml for installation of all python depdendencies * Download boost from sourceforge (#196) * Add verbose to local_test (#191) * Add bindings test for Ubuntu 18.04 (#160) * remove old python bindings. Update tests to only use new bindings * trigger CI * Add tests for bindings on Ubuntu 18.04 Co-authored-by: BenjaminRueth <[email protected]> Co-authored-by: Rüth <[email protected]> * Update deploy section in bindings 1804 * Explicitly list variables when rendering jinja template (#199) * Replace locals() with explicit list * Replace locals() with explicit list * Clarify variable name * Fix variable * Check column names in compare_results.sh (#173) * Compare text columns as well * Remove color arg * Extend numerical diff filter * Revert fe-fe test to wrong columns * Fix line * Remove indent for text diff * Update indentation * Correct fe-fe columns" This reverts commit 3d2a639. * Clean up comments * Fix typo Co-Authored-By: Benjamin Rüth <[email protected]> * Add seperating line * Add prints for script start and end * Update preciceDict Co-authored-by: Benjamin Rüth <[email protected]> * Fix nutils-of test (#178) * Compare text columns as well * Remove color arg * Extend numerical diff filter * Revert fe-fe test to wrong columns * Fix line * Remove indent for text diff * Update indentation * Correct fe-fe columns" This reverts commit 3d2a639. * Clean up comments * Add delay to OF container * Enable verbose output * Fix typo Co-Authored-By: Benjamin Rüth <[email protected]> * Perform clean OF5 install instead of folder copy * Temporarily run docker push not in deploy * Add seperating line * Fix dockerfile argument * Use folder-copy method * Add prints for script start and end * Update preciceDict * Move comment * Update reference files * Clean up job names Co-authored-by: Benjamin Rüth <[email protected]> * Use TRAVIS_BRANCH to select branch of toolchain being tested (#136) * Use TRAVIS_BRANCH to select branch of toolchain being tested #125 * Add logic to also support pull requests * Fix syntax error * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * use correct build-arg for OF Adapter * Fix syntax * Remove preCICe builds * Print wmake.log * Use --branch option for all tests * Add jinja2 (accidentally removed in merge) * Revert changes applied to reference output * Reintroduce changes from #147 (accidentally removed in merge) * Remove libyaml-cpp-dev * Add missing line * Add TRAVIS_BRANCH to bindings 18.04 Co-authored-by: Rüth <[email protected]> Co-authored-by: Konrad Eder <[email protected]> Co-authored-by: Konrad Eder <[email protected]> * Fix OF-OF nearest projection (#203) * Apply #206 to develop (#208) * Add documentation entry for renewing token (#210) * Disable currently failing tests * Disable dealii-of * Extend log pushing to precice_st_output (#201) * Add adapter and precice logs * Add push commands for precice and adapter builds * Fix indent * Move variable declaration * Add log extraction for OF adapters * Add image tag as environ variable * Add log extraction for adapters * Add info on job type * Add comma * Move variable * Create folder earlier * Add debug print * Add debug print * Add print at end of script * Fix variable * Remove export command * Store tag in intermediary file * Import common * Change sourcing command * Fix file reading * Add print * Use file writer instead of env variable * Add debug print * FormattingFormattingFormattingFormattingFormattingFormattingFormattingFormattingFormatting * Remove file after reading * Create temporary container * Add try/except for Travis log requests * Call container by name * Insert launch command * Fix launch command * Simplfy Logs folder creation * Fix Logs folder location * Fix folder path * Remove .home * Fix import * Fix import * Add line * Add debug print * Fix symbol * Fix docker copy * Add zero padding for job names * Make logs folder before test start * Add debug print * Remove debug prints * Remove try-except block * Skip request call * Add headers for log request * Fix variable name * Improve clarity when triggering systemtest (#213) * Only test adapters * Trigger build with updated token * Only run dealii * Update push script call * Fix bracket * Fix bracket * Add link to build * Flush output * Add prints on exit * Add visual separators * Wrap link * Restore travis.yml * Test dealii trigger * Add coloring * Format line * Remove experimental trigger test * Add correct tags * Fix test timeouts (#216) * Make tests verbose * Shorten timesteps to 100 from 400 * Combine directory creation commands * Enable result output for Su2-ccx and nutils-of * Update referenceOutput * Truncate unnecessary jobs * Exclude events log from reference * Exclude events log from reference * Adjust path * Update fortran dummy execution * Update fortran dummy execution * Reduce dealii-of runtime from 5 to 1 * Adjust referenceOutput * Restore travis.yml * Fix log copy * Patch SU2-CCX test output (#217) * Fix log copy * Add watchpoint log to output * Adjust branch argument * Enable output * Restore .travis.yml * Update watchpoing log * Deactivate nutils-of test * Mark su2-ccx test as unstable Co-authored-by: BenjaminRueth <[email protected]> Co-authored-by: Gerasimos Chourdakis <[email protected]> Co-authored-by: Gerasimos Chourdakis <[email protected]> Co-authored-by: Rüth <[email protected]>
Eder-K
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May 6, 2020
* use branch develop as default for all tests * remove old python bindings. Update tests to only use new bindings * Remove python_future * Fix user for binding tests (#96) * Apply tests to python bindings in precice/python-bindings (#133) * replace installation of python bindings from precice/precice with bindings from precice/python-bindings * directly use repository address for pip3 install, avoids cloning * Fix fe-fe test by adding cd to user directory * Allow failure for PETSc * Allow failure for nutils <-> OpenFOAM. #132 * use DOCKER_USERNAME, where it is appropriate * Use Ubuntu18.04 for Nutils-OF test (#132) * remove old python bindings. Update tests to only use new bindings * trigger CI * Remove python_future * use Ubuntu 18.04, don't install enum34 * Update name of test and folder * add ubuntu 18.04 version of OF adapter * trigger CI * fix syntax error * Add output for better logs * use Ubuntu18.04 and OpenFOAM5 for Solver and Adapter * update reference results * Change order to reduce diff * Use OF5 for creation of reference results * add debug output * Use reference results from precice_st_output (#142) * Remove debugging output * Fix tests failing due to no output (#148) * Remove non-tests temporarily * Remove log surpression * Remove -d argument` * Fix replacement of xml element * nutils-of: Fix replacement of xml element (#149) * Fix of-of and of-of_np (#150) * of-of: Fix replacement of xml element * of-of_np: Fix replacement of xml element * Replace post-processing with acceleration using sed * Replace post-processing with acceleration using sed * Revert "Replace post-processing with acceleration using sed" This reverts commit 2460f9a. * Revert "Replace post-processing with acceleration using sed" This reverts commit 832ce4a. * escapte double quotes * Escape quotes Co-authored-by: Konrad Eder <[email protected]> * Fix Calculix-OpenFOAM (#153) Update the locally stored config file according to tutorials#60 * Fix SU2-Calculix (#152) * Update configuration filename * Run silent_compose in detached mode * Revert '-d' argument adding * Redirect ccx output to logfile * Redirect ccx output to null * Fix dealii-of and ccx-of_fsi [PETSc] (#154) * Update sed insertion according to tutorials#60 * Update config.xml names for of-ccx.FSI.petsc * Surpress of-adapter output * Fix participant name * Remove output surpression * Restore silent functionality * Add optional debug argument * Add verbose optional argument * Escape dots * Delay of container start * Run nutils-of in verbose mode * Add success message * Fix typo * Add PETSc of-ccx to allowed failures * Update PETSc of-ccx name * Remove line Co-authored-by: Benjamin Rüth <[email protected]> * Fix nutils-of (#157) * Remove sleep command * Use exit codes for success as well * Add tests for bindings on Ubuntu 18.04 (#129) * remove old python bindings. Update tests to only use new bindings * trigger CI * Add tests for bindings on Ubuntu 18.04 * Revert "Add tests for bindings on Ubuntu 18.04 (#129)" (#159) * Update solverdummy location (#162) * Install Eigen from source for Ubuntu 16.04 (#163) * Identify requests from TravisCI website (#165) * Remove test for preCICE package Ubuntu 16.04 * Add installation of pkg-config (#166) 72a0bd7 switched from installing eigen via apt to installing eigen from source. This results in also not installing pkg-config that is a dependency of eigen. Therefore we now have to individually install pkg-config. Otherwise builds under Ubuntu16.04 relying on pkg-config will fail. * Restructure tools and bindings (#164) * Update path of solverdummies. Was changed in precice/precice#630 from tools/solverdummies to examples/solverdummies. * Update use new repository fortran-module for f2003 solverdummy and corresponding bindings Co-authored-by: Gerasimos Chourdakis <[email protected]> * Allow failure for adapters depending on PETSc * Fix typo * Fix Test_bindings * Change timestep-length to time-window-size * Adapt CMake variables for preCICE v2 (#167) See precice/precice#609 * Add system_testing.py example * Update reference results for su2-ccx test case (#172) * Update column names of reference files (#168) * Update headers for fe-fe test * provoke test failure with wrong reference * Revert "provoke test failure with wrong reference" This reverts commit 90ff76e. * Update column names for fe-fe 1804 * Fix md link * Remove .gitkeep * Update column names * Remove string filter * Update column names * Add missing spaces * Add spacing * Restore filtering * reintroduce whitespace errors to make tests succeed Co-authored-by: Konrad Eder <[email protected]> * Update openfoam-adapter in accordance with config changes (#174) * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Remove preCICe builds * Print wmake.log * Upgrade to OF5 * Fix typo * Update to OF5 * Update reference files for openfoam5 * Update config path manipulation * Update referenceOutput for OF5 * Update referenceOutput for OF5 * Readd preCICE building * Add python script for building images and pushing them (#131) * add system tests for cplscheme * add cplscheme test * run cplscheme test as local test * use Ubuntu 18.04 as base image * Use system_testing.py instead of local_test.py Changed this, since this is the correct way to do it. local_test.py is only meant for local tests. I had to add an additional build stage that uses the debugMasterSockets branch on the preCICE main repository. * Fix indentation * Fix --build-arg and add a Ubuntu18.04 build * first draft solution for #77 * roll out changes to all base images * remove default docker username to force user to provide it and avoid inconsistencies * remove old python bindings. Update tests to only use new bindings * trigger CI * add argument to switch petsc on/off * remove unrelated change * remove unrelated files * modify tag depending on petsc * Factor out tag composition * Add script for pushing * Use benjaminrueth and push_base.py * Fix and document tagging * temporarily allow failure * Use a more explicit name for script * Extract features in python scripts. Introduces some code duplication, but is more flexible. Code duplication will be removed as soon as #137 is solved. * fix error * Use list to keep track of features, add petsc as feature to list for better consistency * use python script for building and pushing adapters * Fix syntax errors * Use dict instead of list This is a partial remedy for the problem mentioned in #131 (comment) * Update push_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update push_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * use dict.get for less verbose code * Fix error * Filter away None * Use less verbose approach Co-authored-by: Konrad Eder <[email protected]> * Overhaul pushing to precice_st_output (#147) * Add file * Replace pushing script * Add pull --rebase to final push * Allow -t, -s arguments for now * Add readme to job folders * Format bash commands * Fix variable * Comment out unneeded functions * Add pushing failsafe * Improve commit msg * Fix function import * Improve README generation * Fix parenthesis * Fix formatting * Fix variable * Add wrapping quotes * Improve readme generation * Fix indents * Fix word * Add message after test success * Only run tests * Replace deploy with after_success * Update push command structure * Add log pushing * Add log pushing * Add logging command * Fix indent * Fix variable name * Fix variable name again * Fix import * Fix variable name * Rename logfile * Rename log file * Make output files optional * Formatting * Fix variable name * Fix var name * Fix name * Uncomment mkdir line * Adjust commit msg building * Add debug print * Add debug prints * Compare with string instead of integer * Enable verbose output * Add Logs to ignored files * Fix base selection * Reuse of container delay * Revert travis xml to original * Move test templates into separate directory * Use jinja for readme templating * Move test templates into separate directory * Move test templates into separate directory * Add missing logs msg * Add missing log message * Add general information * Check if output is enabled * Remove comment block * Compare text columns as well * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Remove preCICe builds * Print wmake.log * Upgrade to OF5 * Fix typo * Add branch info * Add branch info * Remove old pushing script * Update to OF5 * Fix line * Install Jinja2 * Fix path * Fix compare script * Enable output for OF tests * Update reference files for openfoam5 * Update config path manipulation * Update referenceOutput for OF5 * Only run tests * Rename nutils test * Revert compare script to develop version * Remove sleep command * Restore travis jobs * Fix variable name * Insert job name in folder name instead * Set default branch to master * Move job name into commit msg * Update reference data for of-ccx_fsi PETSc (#177) * Update reference data * Remove 0.orig * Update folder naming * Identify PETSc feature * Build preCICE with Debug (#175) * Only install minimal python depdendencies manually * Update to newest pip version * Use pyproject.toml for installation of all python depdendencies * Download boost from sourceforge (#196) * Add verbose to local_test (#191) * Add bindings test for Ubuntu 18.04 (#160) * remove old python bindings. Update tests to only use new bindings * trigger CI * Add tests for bindings on Ubuntu 18.04 Co-authored-by: BenjaminRueth <[email protected]> Co-authored-by: Rüth <[email protected]> * Update deploy section in bindings 1804 * Explicitly list variables when rendering jinja template (#199) * Replace locals() with explicit list * Replace locals() with explicit list * Clarify variable name * Fix variable * Check column names in compare_results.sh (#173) * Compare text columns as well * Remove color arg * Extend numerical diff filter * Revert fe-fe test to wrong columns * Fix line * Remove indent for text diff * Update indentation * Correct fe-fe columns" This reverts commit 3d2a639. * Clean up comments * Fix typo Co-Authored-By: Benjamin Rüth <[email protected]> * Add seperating line * Add prints for script start and end * Update preciceDict Co-authored-by: Benjamin Rüth <[email protected]> * Fix nutils-of test (#178) * Compare text columns as well * Remove color arg * Extend numerical diff filter * Revert fe-fe test to wrong columns * Fix line * Remove indent for text diff * Update indentation * Correct fe-fe columns" This reverts commit 3d2a639. * Clean up comments * Add delay to OF container * Enable verbose output * Fix typo Co-Authored-By: Benjamin Rüth <[email protected]> * Perform clean OF5 install instead of folder copy * Temporarily run docker push not in deploy * Add seperating line * Fix dockerfile argument * Use folder-copy method * Add prints for script start and end * Update preciceDict * Move comment * Update reference files * Clean up job names Co-authored-by: Benjamin Rüth <[email protected]> * Use TRAVIS_BRANCH to select branch of toolchain being tested (#136) * Use TRAVIS_BRANCH to select branch of toolchain being tested #125 * Add logic to also support pull requests * Fix syntax error * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * use correct build-arg for OF Adapter * Fix syntax * Remove preCICe builds * Print wmake.log * Use --branch option for all tests * Add jinja2 (accidentally removed in merge) * Revert changes applied to reference output * Reintroduce changes from #147 (accidentally removed in merge) * Remove libyaml-cpp-dev * Add missing line * Add TRAVIS_BRANCH to bindings 18.04 Co-authored-by: Rüth <[email protected]> Co-authored-by: Konrad Eder <[email protected]> Co-authored-by: Konrad Eder <[email protected]> * Fix OF-OF nearest projection (#203) * Apply #206 to develop (#208) * Add documentation entry for renewing token (#210) * Disable currently failing tests * Disable dealii-of * Extend log pushing to precice_st_output (#201) * Add adapter and precice logs * Add push commands for precice and adapter builds * Fix indent * Move variable declaration * Add log extraction for OF adapters * Add image tag as environ variable * Add log extraction for adapters * Add info on job type * Add comma * Move variable * Create folder earlier * Add debug print * Add debug print * Add print at end of script * Fix variable * Remove export command * Store tag in intermediary file * Import common * Change sourcing command * Fix file reading * Add print * Use file writer instead of env variable * Add debug print * FormattingFormattingFormattingFormattingFormattingFormattingFormattingFormattingFormatting * Remove file after reading * Create temporary container * Add try/except for Travis log requests * Call container by name * Insert launch command * Fix launch command * Simplfy Logs folder creation * Fix Logs folder location * Fix folder path * Remove .home * Fix import * Fix import * Add line * Add debug print * Fix symbol * Fix docker copy * Add zero padding for job names * Make logs folder before test start * Add debug print * Remove debug prints * Remove try-except block * Skip request call * Add headers for log request * Fix variable name * Improve clarity when triggering systemtest (#213) * Only test adapters * Trigger build with updated token * Only run dealii * Update push script call * Fix bracket * Fix bracket * Add link to build * Flush output * Add prints on exit * Add visual separators * Wrap link * Restore travis.yml * Test dealii trigger * Add coloring * Format line * Remove experimental trigger test * Add correct tags * Fix test timeouts (#216) * Make tests verbose * Shorten timesteps to 100 from 400 * Combine directory creation commands * Enable result output for Su2-ccx and nutils-of * Update referenceOutput * Truncate unnecessary jobs * Exclude events log from reference * Exclude events log from reference * Adjust path * Update fortran dummy execution * Update fortran dummy execution * Reduce dealii-of runtime from 5 to 1 * Adjust referenceOutput * Restore travis.yml * Fix log copy * Patch SU2-CCX test output (#217) * Fix log copy * Add watchpoint log to output * Adjust branch argument * Enable output * Restore .travis.yml * Update watchpoing log * Deactivate nutils-of test * Mark su2-ccx test as unstable * Update trigger script in accordance with #147 * Add correct tagging for systest triggers * Use manual tag for docker image Co-authored-by: BenjaminRueth <[email protected]> Co-authored-by: Gerasimos Chourdakis <[email protected]> Co-authored-by: Gerasimos Chourdakis <[email protected]> Co-authored-by: Rüth <[email protected]>
Eder-K
added a commit
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May 15, 2020
* Add test for elastictube1d tutorial * Add referenceOutput for elastictube1d test * Add travis commands for elastictube1d test * Add 1dtube to solver directory * Fix wording * Print avg/max diff values after file content Moves the diff command above the line printing avg and max diff. This is to make it easier to see average/maximal diff values when the amount of line differences are very large in a file. Otherwise the 'diff' command might flood the output and make the avg/max line hard to find. * Add 1dtube to test_type * Rename test to describe python version * Add test for c++ version * Add C++ version of elastictube1d test * Differentiate py and cxx version of elastictube1d * Add C++ version of elastictube1d test * Add missing root permissions for copying results [ci-skip] * Update name of 1dtube argument * Remove wrong cp command [ci skip] * Run whole Dockerfile as root * Remove unnecessary abbreviations * Update 1dtube test names * Update 1dtube test names * Merge with develop and update to more recent folder structure (#155) * Update travis job name for Bindings * Add `allowed_failures` section to travis.yml Also adds the currently failing Ubuntu1804.sudo.mpich job to this section. For a job to be allowed to fail, it must be added to both the `include` and `allowed_failures` sections. A failure of such a job will not cause subseqent stages to be cancelled. * Initial commit to target specific tutorial branch for systemtest * Add launch argument to specify systemtests branch Allows requests to run on a specific branch of the systemtests repository instead of the default master branch * Adding input parameters to commands in docker-compose.yml * Fix docker username on login (#109) * Fix custom tags for adapter images #109 Closes #109 * Initial commit to target specific tutorial branch for systemtest * Add launch argument to specify systemtests branch Allows requests to run on a specific branch of the systemtests repository instead of the default master branch * Adding input parameters to commands in docker-compose.yml * Improve log header info (#107) * Improve automatic commit messages (#106) * New referenceOutput for fe-fe.Ubuntu1804.home * Removing all changes from trigger_systemtests.py for customised testing * Reverting more changes done for customised testing * Removing whitespace in trigger file * Fix dimension setting for reference data * Print build ID when systemtest is triggered (#105) Closes #105 * Print build number instead of build ID (#105) * Update job title to explain failure tolerance * Match job titles in include and allow_failures * Fix travis job list * Fix ubuntu1804.home tag * Use deployment instead of `after_success` (#116) Clean up travis structure Add documentation for adding tests and handling deploy Closes #103 * Only specify job name in `allow_failures` (#117) Closes #117 [skip travis] * Pull from repository before pushing (#118) Issue a `git pull --rebase` before pushing to precice_st_output. This should help scripts erroring due to missing commits in local version. Closes #118 * use branch develop as default for all tests * remove old python bindings. Update tests to only use new bindings * Remove python_future * Fix user for binding tests (#96) * Apply tests to python bindings in precice/python-bindings (#133) * replace installation of python bindings from precice/precice with bindings from precice/python-bindings * directly use repository address for pip3 install, avoids cloning * Fix fe-fe test by adding cd to user directory * Allow failure for PETSc * Allow failure for nutils <-> OpenFOAM. #132 * use DOCKER_USERNAME, where it is appropriate * Use Ubuntu18.04 for Nutils-OF test (#132) * remove old python bindings. Update tests to only use new bindings * trigger CI * Remove python_future * use Ubuntu 18.04, don't install enum34 * Update name of test and folder * add ubuntu 18.04 version of OF adapter * trigger CI * fix syntax error * Add output for better logs * use Ubuntu18.04 and OpenFOAM5 for Solver and Adapter * update reference results * Change order to reduce diff * Use OF5 for creation of reference results * add debug output * Use reference results from precice_st_output (#142) * Remove debugging output * update installation procedure for python bindings * use precice Repository * Fix folder creation wrt user rights * Use precice repository and fix users * Navigate to correct folder * Navigate to correct folder and run correct command Co-authored-by: Konrad Eder <[email protected]> Co-authored-by: Ishaan Desai <[email protected]> Co-authored-by: David Schneider <[email protected]> * Use branch of PR precice/elastictube1d#22 until it is merged * Revert "Use branch of PR precice/elastictube1d#22 until it is merged" This reverts commit bdc1b17. * Update referenceOutput files for 1dtube_py (#161) * Add os version to foldername * Add 1dtube cxx to compose tests * Remove folder permission * Only run elastictube tests * Add env variable * Restore user creation * Add permissions * Remove unused volumes * Make elastictube tests verbose * Update 1dtube cxx reference * Use default develop branch * Improve text filter in compare_results.sh (#212) * Add timestamp filter * Restructure filtering * Adjust referenceOutput * Revert default preCICE branch to develop * Restore TRAVIS_BRANCH This reverts commit 288f71b. * Run on develop instead of TRAVIS_BRANCH * Run on develop instead of TRAVIS_BRANCH * Remove branch arg, use default setting * Use precice develop for tests * Enable output * Enable full diff print * Update reference output * Update outdated argument * Remove events-summary from copied logs * Add small message to each comparison * Purge reference * Update referenceOutput * Convert 1dtube-py to compose test * Add debug print * Update reference for 1dtube-py * Restore travis.yml * Use default precice version (develop) * Make default precice branch develop * Shorten of-ccx petsc test from 5 to 1 * Update reference * Fix yml syntax * Fix style Co-authored-by: Benjamin Rüth <[email protected]> Co-authored-by: Ishaan Desai <[email protected]> Co-authored-by: David Schneider <[email protected]> Co-authored-by: ishaandesai <[email protected]>
Eder-K
added a commit
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Jun 18, 2020
* use branch develop as default for all tests * remove old python bindings. Update tests to only use new bindings * Remove python_future * Fix user for binding tests (#96) * Apply tests to python bindings in precice/python-bindings (#133) * replace installation of python bindings from precice/precice with bindings from precice/python-bindings * directly use repository address for pip3 install, avoids cloning * Fix fe-fe test by adding cd to user directory * Allow failure for PETSc * Allow failure for nutils <-> OpenFOAM. #132 * use DOCKER_USERNAME, where it is appropriate * Use Ubuntu18.04 for Nutils-OF test (#132) * remove old python bindings. Update tests to only use new bindings * trigger CI * Remove python_future * use Ubuntu 18.04, don't install enum34 * Update name of test and folder * add ubuntu 18.04 version of OF adapter * trigger CI * fix syntax error * Add output for better logs * use Ubuntu18.04 and OpenFOAM5 for Solver and Adapter * update reference results * Change order to reduce diff * Use OF5 for creation of reference results * add debug output * Use reference results from precice_st_output (#142) * Remove debugging output * Fix tests failing due to no output (#148) * Remove non-tests temporarily * Remove log surpression * Remove -d argument` * Fix replacement of xml element * nutils-of: Fix replacement of xml element (#149) * Fix of-of and of-of_np (#150) * of-of: Fix replacement of xml element * of-of_np: Fix replacement of xml element * Replace post-processing with acceleration using sed * Replace post-processing with acceleration using sed * Revert "Replace post-processing with acceleration using sed" This reverts commit 2460f9a. * Revert "Replace post-processing with acceleration using sed" This reverts commit 832ce4a. * escapte double quotes * Escape quotes Co-authored-by: Konrad Eder <[email protected]> * Fix Calculix-OpenFOAM (#153) Update the locally stored config file according to tutorials#60 * Fix SU2-Calculix (#152) * Update configuration filename * Run silent_compose in detached mode * Revert '-d' argument adding * Redirect ccx output to logfile * Redirect ccx output to null * Fix dealii-of and ccx-of_fsi [PETSc] (#154) * Update sed insertion according to tutorials#60 * Update config.xml names for of-ccx.FSI.petsc * Surpress of-adapter output * Fix participant name * Remove output surpression * Restore silent functionality * Add optional debug argument * Add verbose optional argument * Escape dots * Delay of container start * Run nutils-of in verbose mode * Add success message * Fix typo * Add PETSc of-ccx to allowed failures * Update PETSc of-ccx name * Remove line Co-authored-by: Benjamin Rüth <[email protected]> * Fix nutils-of (#157) * Remove sleep command * Use exit codes for success as well * Add tests for bindings on Ubuntu 18.04 (#129) * remove old python bindings. Update tests to only use new bindings * trigger CI * Add tests for bindings on Ubuntu 18.04 * Revert "Add tests for bindings on Ubuntu 18.04 (#129)" (#159) * Update solverdummy location (#162) * Install Eigen from source for Ubuntu 16.04 (#163) * Identify requests from TravisCI website (#165) * Remove test for preCICE package Ubuntu 16.04 * Add installation of pkg-config (#166) 72a0bd7 switched from installing eigen via apt to installing eigen from source. This results in also not installing pkg-config that is a dependency of eigen. Therefore we now have to individually install pkg-config. Otherwise builds under Ubuntu16.04 relying on pkg-config will fail. * Restructure tools and bindings (#164) * Update path of solverdummies. Was changed in precice/precice#630 from tools/solverdummies to examples/solverdummies. * Update use new repository fortran-module for f2003 solverdummy and corresponding bindings Co-authored-by: Gerasimos Chourdakis <[email protected]> * Allow failure for adapters depending on PETSc * Fix typo * Fix Test_bindings * Change timestep-length to time-window-size * Adapt CMake variables for preCICE v2 (#167) See precice/precice#609 * Add system_testing.py example * Update reference results for su2-ccx test case (#172) * Update column names of reference files (#168) * Update headers for fe-fe test * provoke test failure with wrong reference * Revert "provoke test failure with wrong reference" This reverts commit 90ff76e. * Update column names for fe-fe 1804 * Fix md link * Remove .gitkeep * Update column names * Remove string filter * Update column names * Add missing spaces * Add spacing * Restore filtering * reintroduce whitespace errors to make tests succeed Co-authored-by: Konrad Eder <[email protected]> * Update openfoam-adapter in accordance with config changes (#174) * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Remove preCICe builds * Print wmake.log * Upgrade to OF5 * Fix typo * Update to OF5 * Update reference files for openfoam5 * Update config path manipulation * Update referenceOutput for OF5 * Update referenceOutput for OF5 * Readd preCICE building * Add python script for building images and pushing them (#131) * add system tests for cplscheme * add cplscheme test * run cplscheme test as local test * use Ubuntu 18.04 as base image * Use system_testing.py instead of local_test.py Changed this, since this is the correct way to do it. local_test.py is only meant for local tests. I had to add an additional build stage that uses the debugMasterSockets branch on the preCICE main repository. * Fix indentation * Fix --build-arg and add a Ubuntu18.04 build * first draft solution for #77 * roll out changes to all base images * remove default docker username to force user to provide it and avoid inconsistencies * remove old python bindings. Update tests to only use new bindings * trigger CI * add argument to switch petsc on/off * remove unrelated change * remove unrelated files * modify tag depending on petsc * Factor out tag composition * Add script for pushing * Use benjaminrueth and push_base.py * Fix and document tagging * temporarily allow failure * Use a more explicit name for script * Extract features in python scripts. Introduces some code duplication, but is more flexible. Code duplication will be removed as soon as #137 is solved. * fix error * Use list to keep track of features, add petsc as feature to list for better consistency * use python script for building and pushing adapters * Fix syntax errors * Use dict instead of list This is a partial remedy for the problem mentioned in #131 (comment) * Update push_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update push_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * use dict.get for less verbose code * Fix error * Filter away None * Use less verbose approach Co-authored-by: Konrad Eder <[email protected]> * Overhaul pushing to precice_st_output (#147) * Add file * Replace pushing script * Add pull --rebase to final push * Allow -t, -s arguments for now * Add readme to job folders * Format bash commands * Fix variable * Comment out unneeded functions * Add pushing failsafe * Improve commit msg * Fix function import * Improve README generation * Fix parenthesis * Fix formatting * Fix variable * Add wrapping quotes * Improve readme generation * Fix indents * Fix word * Add message after test success * Only run tests * Replace deploy with after_success * Update push command structure * Add log pushing * Add log pushing * Add logging command * Fix indent * Fix variable name * Fix variable name again * Fix import * Fix variable name * Rename logfile * Rename log file * Make output files optional * Formatting * Fix variable name * Fix var name * Fix name * Uncomment mkdir line * Adjust commit msg building * Add debug print * Add debug prints * Compare with string instead of integer * Enable verbose output * Add Logs to ignored files * Fix base selection * Reuse of container delay * Revert travis xml to original * Move test templates into separate directory * Use jinja for readme templating * Move test templates into separate directory * Move test templates into separate directory * Add missing logs msg * Add missing log message * Add general information * Check if output is enabled * Remove comment block * Compare text columns as well * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Remove preCICe builds * Print wmake.log * Upgrade to OF5 * Fix typo * Add branch info * Add branch info * Remove old pushing script * Update to OF5 * Fix line * Install Jinja2 * Fix path * Fix compare script * Enable output for OF tests * Update reference files for openfoam5 * Update config path manipulation * Update referenceOutput for OF5 * Only run tests * Rename nutils test * Revert compare script to develop version * Remove sleep command * Restore travis jobs * Fix variable name * Insert job name in folder name instead * Set default branch to master * Move job name into commit msg * Update reference data for of-ccx_fsi PETSc (#177) * Update reference data * Remove 0.orig * Update folder naming * Identify PETSc feature * Build preCICE with Debug (#175) * Only install minimal python depdendencies manually * Update to newest pip version * Use pyproject.toml for installation of all python depdendencies * Download boost from sourceforge (#196) * Add verbose to local_test (#191) * Add bindings test for Ubuntu 18.04 (#160) * remove old python bindings. Update tests to only use new bindings * trigger CI * Add tests for bindings on Ubuntu 18.04 Co-authored-by: BenjaminRueth <[email protected]> Co-authored-by: Rüth <[email protected]> * Update deploy section in bindings 1804 * Explicitly list variables when rendering jinja template (#199) * Replace locals() with explicit list * Replace locals() with explicit list * Clarify variable name * Fix variable * Check column names in compare_results.sh (#173) * Compare text columns as well * Remove color arg * Extend numerical diff filter * Revert fe-fe test to wrong columns * Fix line * Remove indent for text diff * Update indentation * Correct fe-fe columns" This reverts commit 3d2a639. * Clean up comments * Fix typo Co-Authored-By: Benjamin Rüth <[email protected]> * Add seperating line * Add prints for script start and end * Update preciceDict Co-authored-by: Benjamin Rüth <[email protected]> * Fix nutils-of test (#178) * Compare text columns as well * Remove color arg * Extend numerical diff filter * Revert fe-fe test to wrong columns * Fix line * Remove indent for text diff * Update indentation * Correct fe-fe columns" This reverts commit 3d2a639. * Clean up comments * Add delay to OF container * Enable verbose output * Fix typo Co-Authored-By: Benjamin Rüth <[email protected]> * Perform clean OF5 install instead of folder copy * Temporarily run docker push not in deploy * Add seperating line * Fix dockerfile argument * Use folder-copy method * Add prints for script start and end * Update preciceDict * Move comment * Update reference files * Clean up job names Co-authored-by: Benjamin Rüth <[email protected]> * Use TRAVIS_BRANCH to select branch of toolchain being tested (#136) * Use TRAVIS_BRANCH to select branch of toolchain being tested #125 * Add logic to also support pull requests * Fix syntax error * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * use correct build-arg for OF Adapter * Fix syntax * Remove preCICe builds * Print wmake.log * Use --branch option for all tests * Add jinja2 (accidentally removed in merge) * Revert changes applied to reference output * Reintroduce changes from #147 (accidentally removed in merge) * Remove libyaml-cpp-dev * Add missing line * Add TRAVIS_BRANCH to bindings 18.04 Co-authored-by: Rüth <[email protected]> Co-authored-by: Konrad Eder <[email protected]> Co-authored-by: Konrad Eder <[email protected]> * Fix OF-OF nearest projection (#203) * Apply #206 to develop (#208) * Add documentation entry for renewing token (#210) * Disable currently failing tests * Disable dealii-of * Extend log pushing to precice_st_output (#201) * Add adapter and precice logs * Add push commands for precice and adapter builds * Fix indent * Move variable declaration * Add log extraction for OF adapters * Add image tag as environ variable * Add log extraction for adapters * Add info on job type * Add comma * Move variable * Create folder earlier * Add debug print * Add debug print * Add print at end of script * Fix variable * Remove export command * Store tag in intermediary file * Import common * Change sourcing command * Fix file reading * Add print * Use file writer instead of env variable * Add debug print * FormattingFormattingFormattingFormattingFormattingFormattingFormattingFormattingFormatting * Remove file after reading * Create temporary container * Add try/except for Travis log requests * Call container by name * Insert launch command * Fix launch command * Simplfy Logs folder creation * Fix Logs folder location * Fix folder path * Remove .home * Fix import * Fix import * Add line * Add debug print * Fix symbol * Fix docker copy * Add zero padding for job names * Make logs folder before test start * Add debug print * Remove debug prints * Remove try-except block * Skip request call * Add headers for log request * Fix variable name * Improve clarity when triggering systemtest (#213) * Only test adapters * Trigger build with updated token * Only run dealii * Update push script call * Fix bracket * Fix bracket * Add link to build * Flush output * Add prints on exit * Add visual separators * Wrap link * Restore travis.yml * Test dealii trigger * Add coloring * Format line * Remove experimental trigger test * Add correct tags * Fix test timeouts (#216) * Make tests verbose * Shorten timesteps to 100 from 400 * Combine directory creation commands * Enable result output for Su2-ccx and nutils-of * Update referenceOutput * Truncate unnecessary jobs * Exclude events log from reference * Exclude events log from reference * Adjust path * Update fortran dummy execution * Update fortran dummy execution * Reduce dealii-of runtime from 5 to 1 * Adjust referenceOutput * Restore travis.yml * Fix log copy * Patch SU2-CCX test output (#217) * Fix log copy * Add watchpoint log to output * Adjust branch argument * Enable output * Restore .travis.yml * Update watchpoing log * Deactivate nutils-of test * Mark su2-ccx test as unstable * Update trigger script in accordance with #147 * Add correct tagging for systest triggers * Use manual tag for docker image * Fix nutils-of test (#218) * Run only nutils-of, verbose * Update repository location * Keep nutils version constant * Restore travis.yml * Add elastictube1d test (#128) * Add test for elastictube1d tutorial * Add referenceOutput for elastictube1d test * Add travis commands for elastictube1d test * Add 1dtube to solver directory * Fix wording * Print avg/max diff values after file content Moves the diff command above the line printing avg and max diff. This is to make it easier to see average/maximal diff values when the amount of line differences are very large in a file. Otherwise the 'diff' command might flood the output and make the avg/max line hard to find. * Add 1dtube to test_type * Rename test to describe python version * Add test for c++ version * Add C++ version of elastictube1d test * Differentiate py and cxx version of elastictube1d * Add C++ version of elastictube1d test * Add missing root permissions for copying results [ci-skip] * Update name of 1dtube argument * Remove wrong cp command [ci skip] * Run whole Dockerfile as root * Remove unnecessary abbreviations * Update 1dtube test names * Update 1dtube test names * Merge with develop and update to more recent folder structure (#155) * Update travis job name for Bindings * Add `allowed_failures` section to travis.yml Also adds the currently failing Ubuntu1804.sudo.mpich job to this section. For a job to be allowed to fail, it must be added to both the `include` and `allowed_failures` sections. A failure of such a job will not cause subseqent stages to be cancelled. * Initial commit to target specific tutorial branch for systemtest * Add launch argument to specify systemtests branch Allows requests to run on a specific branch of the systemtests repository instead of the default master branch * Adding input parameters to commands in docker-compose.yml * Fix docker username on login (#109) * Fix custom tags for adapter images #109 Closes #109 * Initial commit to target specific tutorial branch for systemtest * Add launch argument to specify systemtests branch Allows requests to run on a specific branch of the systemtests repository instead of the default master branch * Adding input parameters to commands in docker-compose.yml * Improve log header info (#107) * Improve automatic commit messages (#106) * New referenceOutput for fe-fe.Ubuntu1804.home * Removing all changes from trigger_systemtests.py for customised testing * Reverting more changes done for customised testing * Removing whitespace in trigger file * Fix dimension setting for reference data * Print build ID when systemtest is triggered (#105) Closes #105 * Print build number instead of build ID (#105) * Update job title to explain failure tolerance * Match job titles in include and allow_failures * Fix travis job list * Fix ubuntu1804.home tag * Use deployment instead of `after_success` (#116) Clean up travis structure Add documentation for adding tests and handling deploy Closes #103 * Only specify job name in `allow_failures` (#117) Closes #117 [skip travis] * Pull from repository before pushing (#118) Issue a `git pull --rebase` before pushing to precice_st_output. This should help scripts erroring due to missing commits in local version. Closes #118 * use branch develop as default for all tests * remove old python bindings. Update tests to only use new bindings * Remove python_future * Fix user for binding tests (#96) * Apply tests to python bindings in precice/python-bindings (#133) * replace installation of python bindings from precice/precice with bindings from precice/python-bindings * directly use repository address for pip3 install, avoids cloning * Fix fe-fe test by adding cd to user directory * Allow failure for PETSc * Allow failure for nutils <-> OpenFOAM. #132 * use DOCKER_USERNAME, where it is appropriate * Use Ubuntu18.04 for Nutils-OF test (#132) * remove old python bindings. Update tests to only use new bindings * trigger CI * Remove python_future * use Ubuntu 18.04, don't install enum34 * Update name of test and folder * add ubuntu 18.04 version of OF adapter * trigger CI * fix syntax error * Add output for better logs * use Ubuntu18.04 and OpenFOAM5 for Solver and Adapter * update reference results * Change order to reduce diff * Use OF5 for creation of reference results * add debug output * Use reference results from precice_st_output (#142) * Remove debugging output * update installation procedure for python bindings * use precice Repository * Fix folder creation wrt user rights * Use precice repository and fix users * Navigate to correct folder * Navigate to correct folder and run correct command Co-authored-by: Konrad Eder <[email protected]> Co-authored-by: Ishaan Desai <[email protected]> Co-authored-by: David Schneider <[email protected]> * Use branch of PR precice/elastictube1d#22 until it is merged * Revert "Use branch of PR precice/elastictube1d#22 until it is merged" This reverts commit bdc1b17. * Update referenceOutput files for 1dtube_py (#161) * Add os version to foldername * Add 1dtube cxx to compose tests * Remove folder permission * Only run elastictube tests * Add env variable * Restore user creation * Add permissions * Remove unused volumes * Make elastictube tests verbose * Update 1dtube cxx reference * Use default develop branch * Improve text filter in compare_results.sh (#212) * Add timestamp filter * Restructure filtering * Adjust referenceOutput * Revert default preCICE branch to develop * Restore TRAVIS_BRANCH This reverts commit 288f71b. * Run on develop instead of TRAVIS_BRANCH * Run on develop instead of TRAVIS_BRANCH * Remove branch arg, use default setting * Use precice develop for tests * Enable output * Enable full diff print * Update reference output * Update outdated argument * Remove events-summary from copied logs * Add small message to each comparison * Purge reference * Update referenceOutput * Convert 1dtube-py to compose test * Add debug print * Update reference for 1dtube-py * Restore travis.yml * Use default precice version (develop) * Make default precice branch develop * Shorten of-ccx petsc test from 5 to 1 * Update reference * Fix yml syntax * Fix style Co-authored-by: Benjamin Rüth <[email protected]> Co-authored-by: Ishaan Desai <[email protected]> Co-authored-by: David Schneider <[email protected]> Co-authored-by: ishaandesai <[email protected]> * Fix inconsistent output in 1dtube test (#224) * Enable output * Ignore version/revision * Disable output * Code_Aster-adapter system test (#205) * Initial code aster dockerfile * Change the default install directory * Add procedure to install the adapter * Add dockerfiles for Code_Aster solver, and Code_Aster adapter. Prepare dummy docker-compose.yml file for system test * Initial code aster dockerfile * Change the default install directory * Add procedure to install the adapter * Add dockerfiles for Code_Aster solver, and Code_Aster adapter. Prepare dummy docker-compose.yml file for system test * Add docker-compose for Code_Aster. including docker.export * Update docker-compose, still error in REPE_OUT location inside volume * Update docker-compose and docker files for code-aster solver and adapter, to run with a precice coupling with openfoam. * Add codeaster builds * Fix indent * Add codeaster test to compose test list * Add prefix * Fix prefix * Fix prefix * Add referenceOutput * Change code_aster output from binary .med, to ascii .resu results * Fix tutorial path * Fix positional argument * Set default preCICE branch to develop * Update reference * Update reference * Only copy results to Output * Disable output for of-ca Co-authored-by: shkodm <[email protected]> Co-authored-by: Konrad Eder <[email protected]> * Fix indent in codeaster adapter job * Add date to text filter * Update reference files for 1dtube tests (#225) * Update reference * Set permission of Output folder * Fix permissions * Remove debug print * Remove sys.exit (#190) Co-authored-by: Konrad Eder <[email protected]> * Add optional st_branch argument for debugging * Add optional output in trigger_systemtest (#226) * Add shortened output argument * Allow deal.ii adapter failure until tutorials#79 * Adjust dockerfile search * Add base argument to push script * Fix cloning command in preprocessing step * Add variable for install folder name * Replace folder info with install_mode * Differentiate bindings and fenicsadapter branches * Add special preproc command for pip installs Co-authored-by: BenjaminRueth <[email protected]> Co-authored-by: Gerasimos Chourdakis <[email protected]> Co-authored-by: Gerasimos Chourdakis <[email protected]> Co-authored-by: Rüth <[email protected]> Co-authored-by: Ishaan Desai <[email protected]> Co-authored-by: David Schneider <[email protected]> Co-authored-by: ishaandesai <[email protected]> Co-authored-by: Michel Takken <[email protected]> Co-authored-by: shkodm <[email protected]> Co-authored-by: Frédéric Simonis <[email protected]>
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* use branch develop as default for all tests * remove old python bindings. Update tests to only use new bindings * Remove python_future * Fix user for binding tests (#96) * Apply tests to python bindings in precice/python-bindings (#133) * replace installation of python bindings from precice/precice with bindings from precice/python-bindings * directly use repository address for pip3 install, avoids cloning * Fix fe-fe test by adding cd to user directory * Allow failure for PETSc * Allow failure for nutils <-> OpenFOAM. #132 * use DOCKER_USERNAME, where it is appropriate * Use Ubuntu18.04 for Nutils-OF test (#132) * remove old python bindings. Update tests to only use new bindings * trigger CI * Remove python_future * use Ubuntu 18.04, don't install enum34 * Update name of test and folder * add ubuntu 18.04 version of OF adapter * trigger CI * fix syntax error * Add output for better logs * use Ubuntu18.04 and OpenFOAM5 for Solver and Adapter * update reference results * Change order to reduce diff * Use OF5 for creation of reference results * add debug output * Use reference results from precice_st_output (#142) * Remove debugging output * Fix tests failing due to no output (#148) * Remove non-tests temporarily * Remove log surpression * Remove -d argument` * Fix replacement of xml element * nutils-of: Fix replacement of xml element (#149) * Fix of-of and of-of_np (#150) * of-of: Fix replacement of xml element * of-of_np: Fix replacement of xml element * Replace post-processing with acceleration using sed * Replace post-processing with acceleration using sed * Revert "Replace post-processing with acceleration using sed" This reverts commit 2460f9a. * Revert "Replace post-processing with acceleration using sed" This reverts commit 832ce4a. * escapte double quotes * Escape quotes Co-authored-by: Konrad Eder <[email protected]> * Fix Calculix-OpenFOAM (#153) Update the locally stored config file according to tutorials#60 * Fix SU2-Calculix (#152) * Update configuration filename * Run silent_compose in detached mode * Revert '-d' argument adding * Redirect ccx output to logfile * Redirect ccx output to null * Fix dealii-of and ccx-of_fsi [PETSc] (#154) * Update sed insertion according to tutorials#60 * Update config.xml names for of-ccx.FSI.petsc * Surpress of-adapter output * Fix participant name * Remove output surpression * Restore silent functionality * Add optional debug argument * Add verbose optional argument * Escape dots * Delay of container start * Run nutils-of in verbose mode * Add success message * Fix typo * Add PETSc of-ccx to allowed failures * Update PETSc of-ccx name * Remove line Co-authored-by: Benjamin Rüth <[email protected]> * Fix nutils-of (#157) * Remove sleep command * Use exit codes for success as well * Add tests for bindings on Ubuntu 18.04 (#129) * remove old python bindings. Update tests to only use new bindings * trigger CI * Add tests for bindings on Ubuntu 18.04 * Revert "Add tests for bindings on Ubuntu 18.04 (#129)" (#159) * Update solverdummy location (#162) * Install Eigen from source for Ubuntu 16.04 (#163) * Identify requests from TravisCI website (#165) * Remove test for preCICE package Ubuntu 16.04 * Add installation of pkg-config (#166) 72a0bd7 switched from installing eigen via apt to installing eigen from source. This results in also not installing pkg-config that is a dependency of eigen. Therefore we now have to individually install pkg-config. Otherwise builds under Ubuntu16.04 relying on pkg-config will fail. * Restructure tools and bindings (#164) * Update path of solverdummies. Was changed in precice/precice#630 from tools/solverdummies to examples/solverdummies. * Update use new repository fortran-module for f2003 solverdummy and corresponding bindings Co-authored-by: Gerasimos Chourdakis <[email protected]> * Allow failure for adapters depending on PETSc * Fix typo * Fix Test_bindings * Change timestep-length to time-window-size * Adapt CMake variables for preCICE v2 (#167) See precice/precice#609 * Add system_testing.py example * Update reference results for su2-ccx test case (#172) * Update column names of reference files (#168) * Update headers for fe-fe test * provoke test failure with wrong reference * Revert "provoke test failure with wrong reference" This reverts commit 90ff76e. * Update column names for fe-fe 1804 * Fix md link * Remove .gitkeep * Update column names * Remove string filter * Update column names * Add missing spaces * Add spacing * Restore filtering * reintroduce whitespace errors to make tests succeed Co-authored-by: Konrad Eder <[email protected]> * Update openfoam-adapter in accordance with config changes (#174) * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Remove preCICe builds * Print wmake.log * Upgrade to OF5 * Fix typo * Update to OF5 * Update reference files for openfoam5 * Update config path manipulation * Update referenceOutput for OF5 * Update referenceOutput for OF5 * Readd preCICE building * Add python script for building images and pushing them (#131) * add system tests for cplscheme * add cplscheme test * run cplscheme test as local test * use Ubuntu 18.04 as base image * Use system_testing.py instead of local_test.py Changed this, since this is the correct way to do it. local_test.py is only meant for local tests. I had to add an additional build stage that uses the debugMasterSockets branch on the preCICE main repository. * Fix indentation * Fix --build-arg and add a Ubuntu18.04 build * first draft solution for #77 * roll out changes to all base images * remove default docker username to force user to provide it and avoid inconsistencies * remove old python bindings. Update tests to only use new bindings * trigger CI * add argument to switch petsc on/off * remove unrelated change * remove unrelated files * modify tag depending on petsc * Factor out tag composition * Add script for pushing * Use benjaminrueth and push_base.py * Fix and document tagging * temporarily allow failure * Use a more explicit name for script * Extract features in python scripts. Introduces some code duplication, but is more flexible. Code duplication will be removed as soon as #137 is solved. * fix error * Use list to keep track of features, add petsc as feature to list for better consistency * use python script for building and pushing adapters * Fix syntax errors * Use dict instead of list This is a partial remedy for the problem mentioned in #131 (comment) * Update push_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update push_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_precice.py Co-Authored-By: Konrad Eder <[email protected]> * Update build_adapter.py Co-Authored-By: Konrad Eder <[email protected]> * use dict.get for less verbose code * Fix error * Filter away None * Use less verbose approach Co-authored-by: Konrad Eder <[email protected]> * Overhaul pushing to precice_st_output (#147) * Add file * Replace pushing script * Add pull --rebase to final push * Allow -t, -s arguments for now * Add readme to job folders * Format bash commands * Fix variable * Comment out unneeded functions * Add pushing failsafe * Improve commit msg * Fix function import * Improve README generation * Fix parenthesis * Fix formatting * Fix variable * Add wrapping quotes * Improve readme generation * Fix indents * Fix word * Add message after test success * Only run tests * Replace deploy with after_success * Update push command structure * Add log pushing * Add log pushing * Add logging command * Fix indent * Fix variable name * Fix variable name again * Fix import * Fix variable name * Rename logfile * Rename log file * Make output files optional * Formatting * Fix variable name * Fix var name * Fix name * Uncomment mkdir line * Adjust commit msg building * Add debug print * Add debug prints * Compare with string instead of integer * Enable verbose output * Add Logs to ignored files * Fix base selection * Reuse of container delay * Revert travis xml to original * Move test templates into separate directory * Use jinja for readme templating * Move test templates into separate directory * Move test templates into separate directory * Add missing logs msg * Add missing log message * Add general information * Check if output is enabled * Remove comment block * Compare text columns as well * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Remove preCICe builds * Print wmake.log * Upgrade to OF5 * Fix typo * Add branch info * Add branch info * Remove old pushing script * Update to OF5 * Fix line * Install Jinja2 * Fix path * Fix compare script * Enable output for OF tests * Update reference files for openfoam5 * Update config path manipulation * Update referenceOutput for OF5 * Only run tests * Rename nutils test * Revert compare script to develop version * Remove sleep command * Restore travis jobs * Fix variable name * Insert job name in folder name instead * Set default branch to master * Move job name into commit msg * Update reference data for of-ccx_fsi PETSc (#177) * Update reference data * Remove 0.orig * Update folder naming * Identify PETSc feature * Build preCICE with Debug (#175) * Only install minimal python depdendencies manually * Update to newest pip version * Use pyproject.toml for installation of all python depdendencies * Download boost from sourceforge (#196) * Add verbose to local_test (#191) * Add bindings test for Ubuntu 18.04 (#160) * remove old python bindings. Update tests to only use new bindings * trigger CI * Add tests for bindings on Ubuntu 18.04 Co-authored-by: BenjaminRueth <[email protected]> Co-authored-by: Rüth <[email protected]> * Update deploy section in bindings 1804 * Explicitly list variables when rendering jinja template (#199) * Replace locals() with explicit list * Replace locals() with explicit list * Clarify variable name * Fix variable * Check column names in compare_results.sh (#173) * Compare text columns as well * Remove color arg * Extend numerical diff filter * Revert fe-fe test to wrong columns * Fix line * Remove indent for text diff * Update indentation * Correct fe-fe columns" This reverts commit 3d2a639. * Clean up comments * Fix typo Co-Authored-By: Benjamin Rüth <[email protected]> * Add seperating line * Add prints for script start and end * Update preciceDict Co-authored-by: Benjamin Rüth <[email protected]> * Fix nutils-of test (#178) * Compare text columns as well * Remove color arg * Extend numerical diff filter * Revert fe-fe test to wrong columns * Fix line * Remove indent for text diff * Update indentation * Correct fe-fe columns" This reverts commit 3d2a639. * Clean up comments * Add delay to OF container * Enable verbose output * Fix typo Co-Authored-By: Benjamin Rüth <[email protected]> * Perform clean OF5 install instead of folder copy * Temporarily run docker push not in deploy * Add seperating line * Fix dockerfile argument * Use folder-copy method * Add prints for script start and end * Update preciceDict * Move comment * Update reference files * Clean up job names Co-authored-by: Benjamin Rüth <[email protected]> * Use TRAVIS_BRANCH to select branch of toolchain being tested (#136) * Use TRAVIS_BRANCH to select branch of toolchain being tested #125 * Add logic to also support pull requests * Fix syntax error * Remove yaml-cpp install * Remove yaml-cpp install * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete preciceDict * Create preciceDict * Delete precice-adapter-config.yml * Create preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Delete precice-adapter-config.yml * Add preciceDict * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * Update .travis.yml * use correct build-arg for OF Adapter * Fix syntax * Remove preCICe builds * Print wmake.log * Use --branch option for all tests * Add jinja2 (accidentally removed in merge) * Revert changes applied to reference output * Reintroduce changes from #147 (accidentally removed in merge) * Remove libyaml-cpp-dev * Add missing line * Add TRAVIS_BRANCH to bindings 18.04 Co-authored-by: Rüth <[email protected]> Co-authored-by: Konrad Eder <[email protected]> Co-authored-by: Konrad Eder <[email protected]> * Fix OF-OF nearest projection (#203) * Apply #206 to develop (#208) * Add documentation entry for renewing token (#210) * Disable currently failing tests * Disable dealii-of * Extend log pushing to precice_st_output (#201) * Add adapter and precice logs * Add push commands for precice and adapter builds * Fix indent * Move variable declaration * Add log extraction for OF adapters * Add image tag as environ variable * Add log extraction for adapters * Add info on job type * Add comma * Move variable * Create folder earlier * Add debug print * Add debug print * Add print at end of script * Fix variable * Remove export command * Store tag in intermediary file * Import common * Change sourcing command * Fix file reading * Add print * Use file writer instead of env variable * Add debug print * FormattingFormattingFormattingFormattingFormattingFormattingFormattingFormattingFormatting * Remove file after reading * Create temporary container * Add try/except for Travis log requests * Call container by name * Insert launch command * Fix launch command * Simplfy Logs folder creation * Fix Logs folder location * Fix folder path * Remove .home * Fix import * Fix import * Add line * Add debug print * Fix symbol * Fix docker copy * Add zero padding for job names * Make logs folder before test start * Add debug print * Remove debug prints * Remove try-except block * Skip request call * Add headers for log request * Fix variable name * Improve clarity when triggering systemtest (#213) * Only test adapters * Trigger build with updated token * Only run dealii * Update push script call * Fix bracket * Fix bracket * Add link to build * Flush output * Add prints on exit * Add visual separators * Wrap link * Restore travis.yml * Test dealii trigger * Add coloring * Format line * Remove experimental trigger test * Add correct tags * Fix test timeouts (#216) * Make tests verbose * Shorten timesteps to 100 from 400 * Combine directory creation commands * Enable result output for Su2-ccx and nutils-of * Update referenceOutput * Truncate unnecessary jobs * Exclude events log from reference * Exclude events log from reference * Adjust path * Update fortran dummy execution * Update fortran dummy execution * Reduce dealii-of runtime from 5 to 1 * Adjust referenceOutput * Restore travis.yml * Fix log copy * Patch SU2-CCX test output (#217) * Fix log copy * Add watchpoint log to output * Adjust branch argument * Enable output * Restore .travis.yml * Update watchpoing log * Deactivate nutils-of test * Mark su2-ccx test as unstable * Update trigger script in accordance with #147 * Add correct tagging for systest triggers * Use manual tag for docker image * Fix nutils-of test (#218) * Run only nutils-of, verbose * Update repository location * Keep nutils version constant * Restore travis.yml * Add elastictube1d test (#128) * Add test for elastictube1d tutorial * Add referenceOutput for elastictube1d test * Add travis commands for elastictube1d test * Add 1dtube to solver directory * Fix wording * Print avg/max diff values after file content Moves the diff command above the line printing avg and max diff. This is to make it easier to see average/maximal diff values when the amount of line differences are very large in a file. Otherwise the 'diff' command might flood the output and make the avg/max line hard to find. * Add 1dtube to test_type * Rename test to describe python version * Add test for c++ version * Add C++ version of elastictube1d test * Differentiate py and cxx version of elastictube1d * Add C++ version of elastictube1d test * Add missing root permissions for copying results [ci-skip] * Update name of 1dtube argument * Remove wrong cp command [ci skip] * Run whole Dockerfile as root * Remove unnecessary abbreviations * Update 1dtube test names * Update 1dtube test names * Merge with develop and update to more recent folder structure (#155) * Update travis job name for Bindings * Add `allowed_failures` section to travis.yml Also adds the currently failing Ubuntu1804.sudo.mpich job to this section. For a job to be allowed to fail, it must be added to both the `include` and `allowed_failures` sections. A failure of such a job will not cause subseqent stages to be cancelled. * Initial commit to target specific tutorial branch for systemtest * Add launch argument to specify systemtests branch Allows requests to run on a specific branch of the systemtests repository instead of the default master branch * Adding input parameters to commands in docker-compose.yml * Fix docker username on login (#109) * Fix custom tags for adapter images #109 Closes #109 * Initial commit to target specific tutorial branch for systemtest * Add launch argument to specify systemtests branch Allows requests to run on a specific branch of the systemtests repository instead of the default master branch * Adding input parameters to commands in docker-compose.yml * Improve log header info (#107) * Improve automatic commit messages (#106) * New referenceOutput for fe-fe.Ubuntu1804.home * Removing all changes from trigger_systemtests.py for customised testing * Reverting more changes done for customised testing * Removing whitespace in trigger file * Fix dimension setting for reference data * Print build ID when systemtest is triggered (#105) Closes #105 * Print build number instead of build ID (#105) * Update job title to explain failure tolerance * Match job titles in include and allow_failures * Fix travis job list * Fix ubuntu1804.home tag * Use deployment instead of `after_success` (#116) Clean up travis structure Add documentation for adding tests and handling deploy Closes #103 * Only specify job name in `allow_failures` (#117) Closes #117 [skip travis] * Pull from repository before pushing (#118) Issue a `git pull --rebase` before pushing to precice_st_output. This should help scripts erroring due to missing commits in local version. Closes #118 * use branch develop as default for all tests * remove old python bindings. Update tests to only use new bindings * Remove python_future * Fix user for binding tests (#96) * Apply tests to python bindings in precice/python-bindings (#133) * replace installation of python bindings from precice/precice with bindings from precice/python-bindings * directly use repository address for pip3 install, avoids cloning * Fix fe-fe test by adding cd to user directory * Allow failure for PETSc * Allow failure for nutils <-> OpenFOAM. #132 * use DOCKER_USERNAME, where it is appropriate * Use Ubuntu18.04 for Nutils-OF test (#132) * remove old python bindings. Update tests to only use new bindings * trigger CI * Remove python_future * use Ubuntu 18.04, don't install enum34 * Update name of test and folder * add ubuntu 18.04 version of OF adapter * trigger CI * fix syntax error * Add output for better logs * use Ubuntu18.04 and OpenFOAM5 for Solver and Adapter * update reference results * Change order to reduce diff * Use OF5 for creation of reference results * add debug output * Use reference results from precice_st_output (#142) * Remove debugging output * update installation procedure for python bindings * use precice Repository * Fix folder creation wrt user rights * Use precice repository and fix users * Navigate to correct folder * Navigate to correct folder and run correct command Co-authored-by: Konrad Eder <[email protected]> Co-authored-by: Ishaan Desai <[email protected]> Co-authored-by: David Schneider <[email protected]> * Use branch of PR precice/elastictube1d#22 until it is merged * Revert "Use branch of PR precice/elastictube1d#22 until it is merged" This reverts commit bdc1b17. * Update referenceOutput files for 1dtube_py (#161) * Add os version to foldername * Add 1dtube cxx to compose tests * Remove folder permission * Only run elastictube tests * Add env variable * Restore user creation * Add permissions * Remove unused volumes * Make elastictube tests verbose * Update 1dtube cxx reference * Use default develop branch * Improve text filter in compare_results.sh (#212) * Add timestamp filter * Restructure filtering * Adjust referenceOutput * Revert default preCICE branch to develop * Restore TRAVIS_BRANCH This reverts commit 288f71b. * Run on develop instead of TRAVIS_BRANCH * Run on develop instead of TRAVIS_BRANCH * Remove branch arg, use default setting * Use precice develop for tests * Enable output * Enable full diff print * Update reference output * Update outdated argument * Remove events-summary from copied logs * Add small message to each comparison * Purge reference * Update referenceOutput * Convert 1dtube-py to compose test * Add debug print * Update reference for 1dtube-py * Restore travis.yml * Use default precice version (develop) * Make default precice branch develop * Shorten of-ccx petsc test from 5 to 1 * Update reference * Fix yml syntax * Fix style Co-authored-by: Benjamin Rüth <[email protected]> Co-authored-by: Ishaan Desai <[email protected]> Co-authored-by: David Schneider <[email protected]> Co-authored-by: ishaandesai <[email protected]> * Fix inconsistent output in 1dtube test (#224) * Enable output * Ignore version/revision * Disable output * Code_Aster-adapter system test (#205) * Initial code aster dockerfile * Change the default install directory * Add procedure to install the adapter * Add dockerfiles for Code_Aster solver, and Code_Aster adapter. Prepare dummy docker-compose.yml file for system test * Initial code aster dockerfile * Change the default install directory * Add procedure to install the adapter * Add dockerfiles for Code_Aster solver, and Code_Aster adapter. Prepare dummy docker-compose.yml file for system test * Add docker-compose for Code_Aster. including docker.export * Update docker-compose, still error in REPE_OUT location inside volume * Update docker-compose and docker files for code-aster solver and adapter, to run with a precice coupling with openfoam. * Add codeaster builds * Fix indent * Add codeaster test to compose test list * Add prefix * Fix prefix * Fix prefix * Add referenceOutput * Change code_aster output from binary .med, to ascii .resu results * Fix tutorial path * Fix positional argument * Set default preCICE branch to develop * Update reference * Update reference * Only copy results to Output * Disable output for of-ca Co-authored-by: shkodm <[email protected]> Co-authored-by: Konrad Eder <[email protected]> * Fix indent in codeaster adapter job * Add date to text filter * Update reference files for 1dtube tests (#225) * Update reference * Set permission of Output folder * Fix permissions * Remove debug print * Remove sys.exit (#190) Co-authored-by: Konrad Eder <[email protected]> * Add optional st_branch argument for debugging * Add optional output in trigger_systemtest (#226) * Add shortened output argument * Change namings to new dealii solver namings * Allow deal.ii adapter failure until tutorials#79 * Adjust dockerfile search * Add base argument to push script * Fix cloning command in preprocessing step * Change parameter file naming * Add variable for install folder name * Replace folder info with install_mode * Differentiate bindings and fenicsadapter branches * Add special preproc command for pip installs * Remove deal.ii adapter from allowed failures * Update to deal.ii v9.2 solver (#234) * Add internal exceptions (#233) * Add exceptions * Patch referenceOutput for 1dtube tests (#235) * Enable pushing output * Add txt filter for line number * Update CalculiX-related tests to use v2.16 (#231) * Update ccx version to 2.16 * Update solver to ccx 2.16 * Fix line * Use ccx-2.16 docker image * Shorten su2-ccx test to 25 iterations * Update reference for of-ccx * Fix link * Decrease iterations * Update reference * Update reference * Update reference * Enable output for of-ccx_fsi petsc * Enable output for su-ccx * Update reference * Restore travis.yml * Allow deal.ii test to fail until PR merge * Enable output for ccx related tests * Update reference data for ccx tests * Update reference data for nutils-of (#237) * Disable output * Update nutils-of reference data * Update reference files for of-of and of-of_np (#238) * Update numpy/scipy versions in fe-fe test (#241) * Update python version from 3.5 to 3.8 * Use python version 3.7 * Use python v3.6 * Remove numpy install during precice build * Update default precice base image * Install numpy using pip3 * Restore apt-get numpy install for base image * Fix link * Specify numpy v1.14.5 * Move numpy install * Overhaul comparison script core (#176) * Add assertion * Fix variable overwrite in diff computation * Clarify success message * Use total counter instead of NR*NF * Add comma * Rework filters * Add comments * Fix comparison failure in Su2-CalculiX (#244) * Move whitespace removal to prefilter * Enable su2-ccx output * Update reference * Disable output * Add .docker_tag * Remove PETSc jobs from allowed failure list * Add branch argument in correct position * Remove branch arg * Attempt to save logs even if test fails * Allow precice-ubuntu1604 w/ PETSc to fail * Update reference log to include residual warning * Update reference files (#247) * Set locale (#248) * Set locale to en_US.UTF-8 * Install locales with apt * Remove defunct line * Allow fenics-adapter to fail [skip ci] * Fix typo in docs (well... just to trigger Travis) * Update PETSc to v3.12 (#246) * Use PETSc with 18.04 * Update to use PETSc 3.12 with 18.04 * Fix indentation * Merge subsequent run commands * Link petsc library * Adjust linked path * Restore commented lines * Reduce travis.yml temporarily * Use Makefile from calculix-adapter#41 * Separate precice branch from adapter branch * Install ARPACK and spooles from apt * Use PR version of Makefile * Clean up deprecated code * Fix build adapter command * Rename test folder * Extend LD_LIBRARY_PATH * Format command * Remove symbol * Remove slash * Reduce test time to 0.1 * Fix LD_LIBRARY_PATH * Revert max-time to 1 * Use newer openfoam-adapter dockerfile * Update base version in st_output push * Separate preCICE branch and adapter branch * Restore .travis.yml [skip ci] * Update Ubuntu 16.04 PETSc version [ci skip] * Remove debug command [ci skip] * Update openfoam-adapter dockerfile path * Use makefile-dep-apt branch * Fix double PETSc argument * Add permissions to petsc dir * Format line * Move precice user creation * Update base image in openfoam tests to 18.04 * Make Ubuntu 18.04 the default image * Remove 16.04 suffixes * Update default base image * Add missing adapter builds with 18.04 * Add deal.ii 18.04 to allowed failures * Omit suffix for default base image * Update base version for triggered tests * Enable output for 1dtube_py * Update reference * Disable output * Update reference * Fix broken args * Add missing hyphen * Fix nutils-of test command * Fix argument name * Use PETSc download mirror * Install PETSc as root * Fix push arg in of-ccx_fsi * Disable debug output * Update allowed failures Co-authored-by: BenjaminRueth <[email protected]> Co-authored-by: Gerasimos Chourdakis <[email protected]> Co-authored-by: Gerasimos Chourdakis <[email protected]> Co-authored-by: Rüth <[email protected]> Co-authored-by: Ishaan Desai <[email protected]> Co-authored-by: David Schneider <[email protected]> Co-authored-by: ishaandesai <[email protected]> Co-authored-by: Michel Takken <[email protected]> Co-authored-by: shkodm <[email protected]> Co-authored-by: Frédéric Simonis <[email protected]>
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We should use
USER precicefor the bindings tests, as well.This PR should only be merged after #123 has been merged.