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Whatsnew for #3419 #3422

Merged
merged 7 commits into from
Oct 21, 2019
Merged

Whatsnew for #3419 #3422

merged 7 commits into from
Oct 21, 2019

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@crusaderky crusaderky merged commit b0c336f into pydata:master Oct 21, 2019
@max-sixty max-sixty deleted the pyupgrade branch October 21, 2019 11:13
dcherian added a commit to dcherian/xarray that referenced this pull request Oct 21, 2019
* upstream/master:
  Whatsnew for pydata#3419 (pydata#3422)
  Revert changes made in pydata#3358 (pydata#3411)
  Python3.6 idioms (pydata#3419)
  Temporarily mark pseudonetcdf-3.1 as incompatible (pydata#3420)
  Fix and add test for groupby_bins() isnan TypeError. (pydata#3405)
  Update where docstring to make return value type more clear (pydata#3408)
  tests for arrays with units (pydata#3238)
  Fixes to the resample docs (pydata#3400)
dcherian added a commit to dcherian/xarray that referenced this pull request Oct 21, 2019
* upstream/master:
  Whatsnew for pydata#3419 (pydata#3422)
  Revert changes made in pydata#3358 (pydata#3411)
  Python3.6 idioms (pydata#3419)
  Temporarily mark pseudonetcdf-3.1 as incompatible (pydata#3420)
  Fix and add test for groupby_bins() isnan TypeError. (pydata#3405)
  Update where docstring to make return value type more clear (pydata#3408)
  tests for arrays with units (pydata#3238)
dcherian added a commit to dcherian/xarray that referenced this pull request Oct 21, 2019
…e-multiple-dims

* upstream/master:
  Whatsnew for pydata#3419 (pydata#3422)
  Revert changes made in pydata#3358 (pydata#3411)
  Python3.6 idioms (pydata#3419)
  Temporarily mark pseudonetcdf-3.1 as incompatible (pydata#3420)
  Fix and add test for groupby_bins() isnan TypeError. (pydata#3405)
  Update where docstring to make return value type more clear (pydata#3408)
  tests for arrays with units (pydata#3238)
  Fixes to the resample docs (pydata#3400)
dcherian added a commit to dcherian/xarray that referenced this pull request Oct 21, 2019
* upstream/master:
  Whatsnew for pydata#3419 (pydata#3422)
  Revert changes made in pydata#3358 (pydata#3411)
  Python3.6 idioms (pydata#3419)
  Temporarily mark pseudonetcdf-3.1 as incompatible (pydata#3420)
  Fix and add test for groupby_bins() isnan TypeError. (pydata#3405)
  Update where docstring to make return value type more clear (pydata#3408)
  tests for arrays with units (pydata#3238)
  Fixes to the resample docs (pydata#3400)
dcherian added a commit that referenced this pull request Oct 22, 2019
commit b0c336f
Author: Maximilian Roos <[email protected]>
Date:   Mon Oct 21 04:52:36 2019 -0400

    Whatsnew for #3419 (#3422)

    * pyupgrade --py36-plus

    * Update xarray/core/nputils.py

    Co-Authored-By: crusaderky <[email protected]>

    * Update xarray/core/parallel.py

    Co-Authored-By: crusaderky <[email protected]>

    * Update xarray/tests/test_cftime_offsets.py

    Co-Authored-By: crusaderky <[email protected]>

    * Update xarray/tests/test_cftime_offsets.py

    Co-Authored-By: crusaderky <[email protected]>

    * whatsnew

commit 2984415
Author: Rhys Doyle <[email protected]>
Date:   Mon Oct 21 01:17:47 2019 +0100

    Revert changes made in #3358 (#3411)

    * Revert #3358

    * Revision

    * Code review

    * Merge from master

    * Obsolescence note

commit 3c462b9
Author: Maximilian Roos <[email protected]>
Date:   Sun Oct 20 20:16:58 2019 -0400

    Python3.6 idioms (#3419)

    * pyupgrade --py36-plus

    * Update xarray/core/nputils.py

    Co-Authored-By: crusaderky <[email protected]>

    * Update xarray/core/parallel.py

    Co-Authored-By: crusaderky <[email protected]>

    * Update xarray/tests/test_cftime_offsets.py

    Co-Authored-By: crusaderky <[email protected]>

    * Update xarray/tests/test_cftime_offsets.py

    Co-Authored-By: crusaderky <[email protected]>

commit 9886e3c
Author: crusaderky <[email protected]>
Date:   Sun Oct 20 23:42:36 2019 +0100

    Temporarily mark pseudonetcdf-3.1 as incompatible (#3420)

commit 0f7ab0e
Author: Dan Nowacki <[email protected]>
Date:   Thu Oct 17 14:13:44 2019 -0700

    Fix and add test for groupby_bins() isnan TypeError. (#3405)

    * Fix and add test for groupby_bins() isnan TypeError.

    * Better testing

    * black

commit 6cd50cc
Author: pmallas <[email protected]>
Date:   Thu Oct 17 10:15:47 2019 -0400

    Update where docstring to make return value type more clear (#3408)

    * Update where docstring to make return value type more clear

    The where docstring was a little confusing to me.  I misunderstood "Same type as caller' to mean the values in the xarray not the xarray itself.  I think this small change will clean it up for most users.  Thanks.

    * Update xarray/core/common.py

    Co-Authored-By: Maximilian Roos <[email protected]>

commit 55b1ac0
Author: keewis <[email protected]>
Date:   Thu Oct 17 05:13:39 2019 +0200

    tests for arrays with units (#3238)

    * create the empty test file

    * add tests for data array aggregation functions

    * include pint in the ci

    * ignore missing type annotations for pint

    * really skip the tests if pint is not available

    * remove the reason from the importorskip call

    * test that the dataarray constructor does not strip the unit

    * convert every unit stripped warning to an error

    * work around pint not implementing np.allclose yet

    * remove the now unnecessary filterwarnings decorator

    * xfail all tests that depend on pint having a __array_function__

    * treat nans as equal

    * implement tests for simple arithmetic operations

    * use param's id argument to assign readable names

    * add tests for sel() and isel()

    * add more readable names for the unary arithmetics

    * xfail every test that is not yet xfailing

    These don't pass because the constructor raises a unit stripped
    warning - fixed in pint#764.

    * only xfail if pint is not the current development version

    This is test is not really reliable, but sufficient for now.

    * always use lists instead of tuples for indexing

    * add tests for loc and squeeze

    * black

    * add names and xfail marks to the parameters

    * add tests for interp and interp_like

    * implement tests for reindex

    * remove the xfail marks where it is not clear yet that pint is to blame

    * add tests for reindex_like

    * don't pass the new DataArray to a kwarg

    * xfail if not on pint dev

    * refactor the tests

    * add tests for univariate and bivariate ufuncs

    * black

    * xfail aggregation only if pint does not implement __array_function__ yet

    * remove the global filterwarnings mark

    apparently, this caused the tests to change behavior, resulting in
    different errors, or causing tests to pass that should actually fail.

    * add a test case for the repr

    * create a pytest mark that explicitly requires pint's __array_function__

    * also check the string representation in addition to the repr

    * add helpers for creating method tests

    * check that simple aggregation methods work

    * use format() instead of format strings

    * make sure the repr of method calls is different from functions

    * merge the two aggregation tests

    * explicitly check whether pint supports __array_function__

    relying on versions is somewhat fragile.

    * provide a fallback for the new base quantity

    * check that no warning is raised for both with and without coords

    * also check that the repr works both with and without coords

    * wrap all aggregation function calls

    * xfail every call that fails because of something outside xarray

    * xfail tests related to dimension coordinates and indexes

    * use the dimensions from the original array

    * allow passing arguments to the method on call

    * add tests for comparisons

    * add tests for detecting, filling and dropping missing values

    * mark the missing value tests as requiring pint to support duck arrays

    * add tests for isin, where and interpolate_na

    * reformat unit ids and add a test parameter for compatible units

    * remove an unnecessary xfail

    * add tests for the top-level replication functions (*_like)

    * check for whatever pint does with *_like functions

    * add tests for combine_first

    * xfail the bivariate ufunc tests

    * xfail the call to np.median

    * move the top-level function tests out of the DataArray namespace class

    * add cumsum and cumprod to the list of aggregation functions

    * add tests for the numpy methods

    * check for equal units directly after checking the magnitude

    * add tests for content manipulation methods

    * add tests for comparing DataArrays (equals, indentical)

    * add a test for broadcast_equals

    * refactor the comparison operation tests

    * rewrite the strip, attach and assert_equal functions and add extract

    * preserve multiindex in strip and attach

    * attach the unit from element "data" as fallback

    * fix some small typos

    * compare QuantityScalar and QuantitySequence based on their values

    * make the isel test more robust

    * add tests for reshaping and reordering

    * unify the structure of the tests

    * mark the remaining tests as requiring a recent pint version, too

    * explicitly handle quantities as parameters

    * change the repr of the function / method wrappers

    * check whether __init__ and repr / str handle units in data and coords

    * generalize array_attach_units

    * move the redefinition of DimensionalityError

    * identify quantities using isinstance

    * typo

    * skip tests with a pint version without __array_function__

    * compare DataArrays where possible

    * mark only the compatible unit as xfailing

    * preserve the name of data arrays

    * also attach units to x_mm

    * Test in more CI environments; documentation

    * What's New

    * remove a stale function

    * use Quantity directly for instance tests

    * explicitly set roll_coords to silence a deprecation warning

    * skip the whole module if pint does not implement __array_function__

    the advantage is that now forgetting to decorate a test case is not possible.

    * allow to attach units using the mapping from extract_units

    * add tests for computation methods

    resampling fails until I figure out how to use it with non-datetime coords.

    * add tests for grouped operations

    * add a test for rolling_exp

    * add a todo note for the module level skip on __array_function__

    * add a test for dot

    * use attach_units instead of manually attaching

    * modify the resample test to actually work

    * add a test for to_unstacked_dataset

    * update whats-new.rst and installing.rst

    * reformat the whats-new.rst entry

    * What's New

commit 1f81338
Author: keewis <[email protected]>
Date:   Wed Oct 16 20:54:27 2019 +0200

    Fixes to the resample docs (#3400)

    * add a missing newline to make sphinx detect the code block

    * update the link to the pandas documentation

    * explicitly state that this only works with datetime dimensions

    * also put the datetime dim requirement into the function description

    * add Series.resample and DataFrame.resample as reference

    * add the changes to whats-new.rst

    * move references to the bottom of the docstring

commit 3f9069b
Author: Joseph Hamman <[email protected]>
Date:   Mon Oct 14 14:22:08 2019 -0700

    Revert to dev version

commit 62943e2
Author: Joseph Hamman <[email protected]>
Date:   Mon Oct 14 12:51:46 2019 -0700

    Release v0.14.0

commit 30472ec
Author: Joseph Hamman <[email protected]>
Date:   Mon Oct 14 12:24:05 2019 -0700

    updates for 0.14 release [black only]

commit 4519843
Author: Joseph Hamman <[email protected]>
Date:   Mon Oct 14 12:18:54 2019 -0700

    updates for 0.14 release

commit 4f5ca73
Author: Deepak Cherian <[email protected]>
Date:   Mon Oct 14 18:06:53 2019 +0000

    Make concat more forgiving with variables that are being merged. (#3364)

    * Make concat more forgiving with variables that are being merged.

    * rename test.

    * simplify test.

    * make diff smaller.

commit ae1d8c7
Author: Crypto Jerônimo <[email protected]>
Date:   Sun Oct 13 15:38:36 2019 +0100

    Fix documentation typos (#3396)

commit 863e490
Author: Joe Hamman <[email protected]>
Date:   Sat Oct 12 17:33:33 2019 -0400

    OrderedDict --> dict, some python3.5 cleanup too (#3389)

    * OrderedDict --> dict, some python3.5 cleanup too

    * respond to part of @shoyer's review

    * fix set attr syntax on netcdf4 vars

    * fix typing errors

    * update whats new and todo comments

    * Typing annotations

    * Typing annotations

    * Fix regression

    * More substantial changes

    * More polish

    * Typing annotations

    * Rerun notebooks

commit 6851e3e
Author: crusaderky <[email protected]>
Date:   Sat Oct 12 21:05:32 2019 +0100

    Annotate LRUCache (#3395)

commit 4c05d38
Author: Stephan Hoyer <[email protected]>
Date:   Fri Oct 11 08:47:57 2019 -0700

    BUG: overrides to a dimension coordinate do not get aligned (#3393)

    Fixes GH3377

commit 3f29551
Author: Deepak Cherian <[email protected]>
Date:   Thu Oct 10 23:44:19 2019 +0000

    map_blocks (#3276)

    * map_block attempt 2

    * Address reviews: errors, args + kwargs support.

    * Works with datasets!

    * remove wrong comment.

    * Support chunks.

    * infer template.

    * cleanup

    * cleanup2

    * api.rst

    * simple shape change error check.

    * Make test more complicated.

    * Fix for when user function doesn't set DataArray.name

    * Now _to_temp_dataset works.

    * Add whats-new

    * chunks kwarg makes no sense right now.

    * review feedback:

    1. skip index graph nodes.
    2. var → name
    3. quicker dataarray creation.
    4. Add restrictions to docstring.
    5. rename chunk construction task.
    6. error when non-xarray object is returned.
    7. restore non-coord dims.

    review

    * Support nondim coords in make_meta.

    * Add Dataset.unify_chunks

    * doc updates.

    * minor.

    * update comment.

    * More complicated test dataset. Tests fail :X

    * Don't know why compute is needed.

    * work with DataArray nondim coords.

    * fastpath unify_chunks

    * comment.

    * much improved tests.

    * Change args, kwargs syntax.

    * Add dataset, dataarray methods.

    * api.rst

    * docstrings.

    * Fix unify_chunks.

    * Move assert_chunks_equal to xarray.testing.

    * minor changes.

    * Better error handling when inferring returned object

    * wip

    * wip

    * better to_array

    * Docstrings + nicer error message.

    * remove unify_chunks in map_blocks + better tests.

    * typing for unify_chunks

    * address more review comments.

    * more unify_chunks tests.

    * Just use dask.core.utils.meta_from_array

    * get tests working. assert_equal needs a lot of fixing.

    * more unify_chunks test.

    * assert_chunks_equal fixes.

    * copy over meta_from_array.

    * minor fixes.

    * raise chunks error earlier and test for map_blocks raising chunk error

    * fix.

    * Type annotations

    * py35 compat

    * make sure unify_chunks does not compute.

    * Make tests functional by call compute before assert_equal

    * Update whats-new

    * Work with attributes.

    * Support attrs and name changes.

    * more assert_equal

    * test changing coord attribute

    * fix whats new

    * rework tests to use fixtures (kind of)

    * more review changes.

    * cleanup

    * more review feedback.

    * fix unify_chunks.

    * read dask_array_compat :)

    * Dask 1.2.0 compat.

    * documentation polish

    * make_meta reflow

    * cosmetic

    * polish

    * Fix tests

    * isort

    * isort

    * Add func call to docstrings.

commit 291cb80
Author: Deepak Cherian <[email protected]>
Date:   Thu Oct 10 18:23:20 2019 +0000

    Add groupby.dims & Fix groupby reduce for DataArray (#3338)

    * Fix groupby reduce for DataArray

    * bugfix.

    * another bugfix.

    * bugfix unique_and_monotonic for object indexes (uniqueness is enough)

    * Add groupby.dims property.

    * update reduce docstring to point to xarray.ALL_DIMS

    * test for object index dims.

    * test reduce dimensions error.

    * Add whats-new

    * fix docs build

    * sq whats-new

    * one more test.

    * fix test.

    * undo monotonic change.

    * Add dimensions to repr.

    * Raise error if no bins.

    * Raise nice error if no groups were formed.

    * Some more error raising and testing.

    * Add dataset tests.

    * update whats-new.

    * fix tests.

    * make dims a cached lazy property.

    * fix whats-new.

    * whitespace

    * fix whats-new

commit 3f0049f
Author: crusaderky <[email protected]>
Date:   Wed Oct 9 19:01:29 2019 +0100

    Speed up isel and __getitem__ (#3375)

    * Variable.isel cleanup/speedup

    * Dataset.isel code cleanup

    * Speed up isel

    * What's New

    * Better error checks

    * Speedup

    * type annotations

    * Update doc/whats-new.rst

    Co-Authored-By: Maximilian Roos <[email protected]>

    * What's New

    * What's New

    * Always shallow-copy variables

commit 132733a
Author: Deepak Cherian <[email protected]>
Date:   Tue Oct 8 22:13:47 2019 +0000

    Fix concat bug when concatenating unlabeled dimensions. (#3362)

    * Fix concat bug when concatenating unlabeled dimensions.

    * Add whats-new

    * Add back older test.

    * fix test

    * Revert "fix test"

    This reverts commit c33ca34.

    * better fix

commit 6fb272c
Author: crusaderky <[email protected]>
Date:   Tue Oct 8 22:23:46 2019 +0100

    Rolling minimum dependency versions policy (#3358)

    * - Downgrade numpy to 1.14, pandas to 0.20, scipy to 0.19 (24 months old)
    - Downgrade dask to 1.1 (6 months old)
    - Don't pin patch versions

    * Apply rolling policy (see #3222)

    * Automated tool to verify the minimum versions

    * Drop Python 3.5

    * lint

    * Trivial cosmetic

    * Cosmetic

    * (temp) debug CI failure

    * Parallelize versions check script

    * Remove hacks for legacy dask

    * Documentation

    * Assorted cleanup

    * Assorted cleanup

    * Fix regression

    * Cleanup

    * type annotations upgraded to Python 3.6

    * count_not_none backport

    * pd.Index.equals on legacy pandas returned False when comparing vs. a ndarray

    * Documentation

    * pathlib cleanup

    * Slide deprecations from 0.14 to 0.15

    * More cleanups

    * More cleanups

    * Fix min_deps_check

    * Fix min_deps_check

    * Set policy of 12 months for pandas and scipy

    * Cleanup

    * Cleanup

    * Sphinx fix

    * Overhaul readthedocs environment

    * Fix test crash

    * Fix test crash

    * Prune readthedocs environment

    * Cleanup

    * Hack around versioneer bug on readthedocs CI

    * Code review

    * Prevent random timeouts in the readthedocs CI

    * What's New polish

    * Merge from Master

    * Trivial cosmetic

    * Reimplement pandas.core.common.count_not_none

commit 3e2a754
Author: Alan D. Snow <[email protected]>
Date:   Tue Oct 8 09:36:52 2019 -0500

    added geocube and rioxarray to related projects (#3383)

commit 4254b4a
Author: crusaderky <[email protected]>
Date:   Fri Oct 4 23:17:56 2019 +0100

    Lint (#3373)

    * raise exception instance, not class

    * isort

    * isort

    * Bump mypy version

commit 283b4fe
Author: Deepak Cherian <[email protected]>
Date:   Fri Oct 4 17:04:36 2019 +0000

    Docs/more fixes (#2934)

    * Move netcdf to beginning of io.rst

    * Better indexing example.

    * Start de-emphasizing pandas

    * misc.

    * compute, load, persist docstrings + text.

    * split-apply-combine.

    * np.newaxis.

    * misc.

    * some dask stuff.

    * Little more dask.

    * undo index.rst changes.

    * link to dask docs on chunks

    * Fix io.rst.

    * small changes.

    * rollingupdate.

    * joe's review

commit dfdeef7
Author: Stephan Hoyer <[email protected]>
Date:   Thu Oct 3 21:42:50 2019 -0700

    Explicitly keep track of indexes with merging (#3234)

    * Explicitly keep track of indexes in merge.py

    * Typing fixes

    * More tying fixes

    * more typing fixes

    * fixup

commit 86fb71d
Author: Deepak Cherian <[email protected]>
Date:   Thu Oct 3 15:41:50 2019 +0000

    groupby repr (#3344)

    * groupby repr

    * add test.

    * test datetime and nondim coord

    * rename test_da → repr_da

    * Add whats-new

    * Update doc/whats-new.rst

commit dd2b803
Author: Ryan May <[email protected]>
Date:   Wed Oct 2 15:43:44 2019 -0600

    Remove setting of universal wheels (#3367)

    Universal wheels indicate that one wheel supports Python 2 and 3. This
    is no longer the case for xarray. This causes builds to generate files
    with names like xarray-0.13.0-py2.py3-none-any.whl, which can cause
    pip to incorrectly install the wheel when installing from a list of
    wheel files.

commit 21705e6
Author: crusaderky <[email protected]>
Date:   Tue Oct 1 19:13:55 2019 +0100

    Revisit # noqa annotations (#3359)

commit fb575eb
Author: crusaderky <[email protected]>
Date:   Tue Oct 1 15:11:21 2019 +0100

    Fix codecov.io upload on Windows (#3360)

commit 1ab2279
Author: Deepak Cherian <[email protected]>
Date:   Mon Sep 30 21:12:22 2019 +0000

    Add how do I ... section (#3357)

    * Add how do I ... section

    * Bbugfix.

    * Update doc/howdoi.rst

    Co-Authored-By: Maximilian Roos <[email protected]>

    * Update doc/howdoi.rst

    Co-Authored-By: Maximilian Roos <[email protected]>

    * small updates.

    * Add more.

commit bd1069b
Author: Gregory Gundersen <[email protected]>
Date:   Sun Sep 29 19:39:53 2019 -0400

    Add glossary to documentation (#3352)

    * First draft at terminology glossary.

    * Made name matching rules more explicit and hopefully clearer.

    * Amended what's new.

    * Changes based on feedback.

    * More changed based on feedback.

commit b51683f
Author: Anderson Banihirwe <[email protected]>
Date:   Sun Sep 29 07:50:21 2019 -0600

    Documentation improvements (#3328)

    * Add examples for full_like, zeros_like, ones_like

    * Add examples for xr.align

    * Add examples for xr.merge

    * Update xr.where docstring

    * Update xr.dot docstring

    * Update xarray/core/common.py

    Co-Authored-By: Deepak Cherian <[email protected]>

    * Update xarray/core/common.py

    Co-Authored-By: Deepak Cherian <[email protected]>

    * Update xr.combine_by_coords docstring

    * Apply black formatting only

    * More black formatting

    * Remove unnecessary pandas bits

    * Fix indentation issues

    * Update assign and pipe

    * Update `Dataset.reindex` with examples

    * Update `Dataset.fillna` with examples

    * Address styling issues

    * Update docstring

    Co-Authored-By: Deepak Cherian <[email protected]>

commit f3c7da6
Author: Gregory Gundersen <[email protected]>
Date:   Sat Sep 28 15:57:36 2019 -0400

    Remove `complex.nc` from built docs (#3353)

    * Rolling back to prevent a different issue from leaking into this one.

    * Amended what's new.

commit 6ece6a1
Author: Tony Tung <[email protected]>
Date:   Thu Sep 26 22:45:26 2019 -0700

    Fix DataArray.to_netcdf type annotation (#3325)

    It calls DataSet.to_netcdf, which returns Union[bytes, "Delayed", None].  So this should as well.

commit 16fdac9
Author: crusaderky <[email protected]>
Date:   Thu Sep 26 10:38:46 2019 +0100

    CI test suites with pinned minimum dependencies (#3346)

    * CI test suites with pinned minimum dependencies

    * code review

    * Clarity re lxml

commit ea101f5
Author: Tom Nicholas <[email protected]>
Date:   Thu Sep 26 10:51:58 2019 +0200

    Bugfix/plot accept coord dim (#3345)

    Bug in plot.line fixed by ensuring 1D coords are cast down to their associated dims. There was previously two particular cases where this would not happen.

commit 85c9a40
Author: crusaderky <[email protected]>
Date:   Wed Sep 25 02:40:54 2019 +0100

    CI environments overhaul (#3340)

    * Rationalize and align CI environments. Add many optional dependencies to individual CI suites.

    * pynio and cdms2 are not available on Windows

    * cfgrib causes Python interpreter crash on Windows

    * dtype of np.arange defaults to int64 on Linux and int32 on Windows

    * Suppress failure to delete file on Windows

    * Mark hypotesis tests as @slow
dcherian added a commit to dcherian/xarray that referenced this pull request Oct 22, 2019
* upstream/master:
  Whatsnew for pydata#3419 (pydata#3422)
  Revert changes made in pydata#3358 (pydata#3411)
  Python3.6 idioms (pydata#3419)
  Temporarily mark pseudonetcdf-3.1 as incompatible (pydata#3420)
  Fix and add test for groupby_bins() isnan TypeError. (pydata#3405)
  Update where docstring to make return value type more clear (pydata#3408)
  tests for arrays with units (pydata#3238)
  Fixes to the resample docs (pydata#3400)
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