Fixing report generation after upload

[andrea-pasquale]

Closes #934

Checklist:

• Reviewers confirm new code works as expected.
• Tests are passing.
• Coverage does not decrease.
• Documentation is updated.
• Compatibility with Qibo modules (Please edit this section if the current pull request is not compatible with the following branches).
  • Qibo: master
  • Qibolab: main
  • Qibolab_platforms_qrc: main

[codecov]

Codecov Report

Attention: Patch coverage is 42.85714% with 4 lines in your changes missing coverage. Please review.

Project coverage is 97.57%. Comparing base (93d8908) to head (4246ec9).

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #935      +/-   ##
==========================================
- Coverage   97.59%   97.57%   -0.03%     
==========================================
  Files         118      118              
  Lines        9016     9015       -1     
==========================================
- Hits         8799     8796       -3     
- Misses        217      219       +2     

Flag	Coverage Δ
unittests	97.57% <42.85%> (-0.03%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files	Coverage Δ
src/qibocal/auto/output.py	100.00% <100.00%> (ø)
src/qibocal/cli/upload.py	33.33% <20.00%> (-0.76%)	⬇️

... and 1 file with indirect coverage changes