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When working with a custom genome, I was able to successfully index the genome. However, when I use snap-pre it is unclear what to set as the genome name. I assumed it was the output prefix after indexing the genome, but it appears your code only looks at the internal GENOMELIST object. Was indexing the genome supposed to add it to the list? What am I supposed to use for the genome name?
The text was updated successfully, but these errors were encountered:
When working with a custom genome, I was able to successfully index the genome. However, when I use snap-pre it is unclear what to set as the genome name. I assumed it was the output prefix after indexing the genome, but it appears your code only looks at the internal GENOMELIST object. Was indexing the genome supposed to add it to the list? What am I supposed to use for the genome name?
The text was updated successfully, but these errors were encountered: