Add haralick start log and update docker images.

radxtools · Sep 10, 2020 · f409a01 · f409a01
1 parent 0784b47
commit f409a01
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Showing 4 changed files with 6 additions and 3 deletions.
diff --git a/docker/dev_environment/collageradiomics_examples/Dockerfile b/docker/dev_environment/collageradiomics_examples/Dockerfile
@@ -2,7 +2,7 @@ FROM nathanhillyer/ml-base
 ENV LANG C.UTF-8
 RUN PIP_INSTALL="python -m pip install --upgrade --no-cache-dir --retries 10 --timeout 60" && \
     $PIP_INSTALL \
-        collageradiomics==0.2.1 \
+        collageradiomics==0.2.5 \
         Pillow \
         && \
     ldconfig && \

diff --git a/docker/dev_environment/collageradiomics_pip/Dockerfile b/docker/dev_environment/collageradiomics_pip/Dockerfile
@@ -2,7 +2,7 @@ FROM nathanhillyer/ubuntu-base
 ENV LANG C.UTF-8
 RUN PIP_INSTALL="python -m pip install --upgrade --no-cache-dir --retries 10 --timeout 60" && \
     $PIP_INSTALL \
-        collageradiomics==0.1.2.1 \
+        collageradiomics==0.2.5 \
         && \
     ldconfig && \
     apt-get clean && \

diff --git a/module/VERSION b/module/VERSION
@@ -1 +1 @@
-0.2.4
+0.2.5
diff --git a/module/collageradiomics.py b/module/collageradiomics.py
@@ -484,6 +484,9 @@ def calculate_haralick_textures(self, dominant_angles):
         if self.verbose_logging:
             print(f'dominant_angles_binned shape is {shape} mask shape is {self.mask_array.shape}')
 
+        if self.verbose_logging:
+            print('starting haralick calculations...')
+
         # We extended the dominant angles by one slice in each direction, so now we need to trim those off.
         for z in range(1, depth - 1):
             for y,x in product(range(height), range(width)):