Fixed documentation on GsvaExprData

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: GSVA
-Version: 1.50.3
+Version: 1.50.4
 Title: Gene Set Variation Analysis for Microarray and RNA-Seq Data
 Authors@R: c(person("Robert", "Castelo", role=c("aut", "cre"), email="[email protected]"),
              person("Justin", "Guinney", role="aut", email="[email protected]"),
@@ -22,4 +22,4 @@ BugReports: https://github.com/rcastelo/GSVA/issues
 Encoding: UTF-8
 biocViews: FunctionalGenomics, Microarray, RNASeq, Pathways, GeneSetEnrichment
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1

R/AllClasses.R

@@ -6,7 +6,7 @@
 #' Virtual superclass of expression data classes supported by `GSVA`.
 #'
 #' `GSVA` supports expression data matrices in a growing number of containers
-#' and representations.  This class union allows to store any of these in a slot
+#' and representations. This class union allows to store any of these in a slot
 #' of another class as well as defining common methods for all of them.
 #'
 #' @seealso
@@ -17,6 +17,7 @@
 #' [`SingleCellExperiment-class`],
 #' [`HDF5Array`]
 #'
+#' @aliases GsvaExprData
 #' @name GsvaExprData-class
 #' @rdname GsvaExprData-class
 #' @exportClass GsvaExprData

R/gsvaParam.R

@@ -8,7 +8,8 @@
 #' gene sets, `GSVA` takes four method-specific parameters as described below.
 #'
 #' @param exprData The expression data.  Must be one of the classes
-#' supported by [`GsvaExprData-class`].
+#' supported by [`GsvaExprData-class`].  Type `help(GsvaExprData)` to consult
+#' the available classes.
 #'
 #' @param geneSets The gene sets.  Must be one of the classes supported by
 #' [`GsvaGeneSets-class`].

R/plageParam.R

@@ -8,7 +8,8 @@
 #' an expression data set and a collection of gene sets.
 #'
 #' @param exprData The expression data.  Must be one of the classes
-#' supported by [`GsvaExprData-class`].
+#' supported by [`GsvaExprData-class`].  Type `help(GsvaExprData)` to consult
+#' the available classes.
 #'
 #' @param geneSets The gene sets.  Must be one of the classes supported by
 #' [`GsvaGeneSets-class`].

R/ssgseaParam.R

@@ -8,7 +8,8 @@
 #' gene sets, `ssGSEA` takes two method-specific parameters as described below.
 #'
 #' @param exprData The expression data.  Must be one of the classes
-#' supported by [`GsvaExprData-class`].
+#' supported by [`GsvaExprData-class`].  Type `help(GsvaExprData)` to consult
+#' the available classes.
 #'
 #' @param geneSets The gene sets.  Must be one of the classes supported by
 #' [`GsvaGeneSets-class`].

R/zscoreParam.R

@@ -9,7 +9,8 @@
 #' sets.
 #'
 #' @param exprData The expression data.  Must be one of the classes
-#' supported by [`GsvaExprData-class`].
+#' supported by [`GsvaExprData-class`].  Type `help(GsvaExprData)` to consult
+#' the available classes.
 #'
 #' @param geneSets The gene sets.  Must be one of the classes supported by
 #' [`GsvaGeneSets-class`].