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Fixed documentation on GsvaExprData
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rcastelo committed Apr 12, 2024
1 parent 794322b commit c76780f
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Showing 6 changed files with 10 additions and 5 deletions.
2 changes: 1 addition & 1 deletion DESCRIPTION
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Package: GSVA
Version: 1.51.9
Version: 1.51.10
Title: Gene Set Variation Analysis for Microarray and RNA-Seq Data
Authors@R: c(person("Robert", "Castelo", role=c("aut", "cre"), email="[email protected]"),
person("Justin", "Guinney", role="aut", email="[email protected]"),
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1 change: 1 addition & 0 deletions R/AllClasses.R
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#' @importClassesFrom DelayedArray DelayedArray
#' @importClassesFrom HDF5Array HDF5Array
#'
#' @aliases GsvaExprData
#' @name GsvaExprData-class
#' @rdname GsvaExprData-class
#' @exportClass GsvaExprData
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3 changes: 2 additions & 1 deletion R/gsvaParam.R
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#' gene sets, `GSVA` takes four method-specific parameters as described below.
#'
#' @param exprData The expression data. Must be one of the classes
#' supported by [`GsvaExprData-class`].
#' supported by [`GsvaExprData-class`]. Type `help(GsvaExprData)` to consult
#' the available classes.
#'
#' @param geneSets The gene sets. Must be one of the classes supported by
#' [`GsvaGeneSets-class`].
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3 changes: 2 additions & 1 deletion R/plageParam.R
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#' an expression data set and a collection of gene sets.
#'
#' @param exprData The expression data. Must be one of the classes
#' supported by [`GsvaExprData-class`].
#' supported by [`GsvaExprData-class`]. Type `help(GsvaExprData)` to consult
#' the available classes.
#'
#' @param geneSets The gene sets. Must be one of the classes supported by
#' [`GsvaGeneSets-class`].
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3 changes: 2 additions & 1 deletion R/ssgseaParam.R
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#' gene sets, `ssGSEA` takes two method-specific parameters as described below.
#'
#' @param exprData The expression data. Must be one of the classes
#' supported by [`GsvaExprData-class`].
#' supported by [`GsvaExprData-class`]. Type `help(GsvaExprData)` to consult
#' the available classes.
#'
#' @param geneSets The gene sets. Must be one of the classes supported by
#' [`GsvaGeneSets-class`].
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3 changes: 2 additions & 1 deletion R/zscoreParam.R
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#' sets.
#'
#' @param exprData The expression data. Must be one of the classes
#' supported by [`GsvaExprData-class`].
#' supported by [`GsvaExprData-class`]. Type `help(GsvaExprData)` to consult
#' the available classes.
#'
#' @param geneSets The gene sets. Must be one of the classes supported by
#' [`GsvaGeneSets-class`].
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