ImageJ toolset for the anlysis of clonal patterns
ClonalTools are a set of macros designed for the analysis of mosaic patterns. The macros correct for the effects of random clumping using the formula 1/(1-p) devised by Roach (1968) in the way outlined by West (1975, 1976) and West et al (1997).
Clonal Analysis Tools relies on BinaryFilterReconstruct_.class written by Gabriel Landini. Install Gabriel Landini's Morphology Collection from http://www.dentistry.bham.ac.uk/landinig/software/software.html, download clonaltools_0.2a.txt.zip and extract to ImageJ/Macros/Toolsets folder.
References:
Mort RL. Quantitative analysis of patch patterns in mosaic tissues withClonalTools software. J Anat. 2009 Dec;215(6):698-704.
West, J. D. (1975). A theoretical approach to the relation between patch size and clone size in chimaeric tissue. J. Theor. Biol. 50, 153-160.
West JD. (1976). Clonal development of the retinal epithelium in mouse chimaeras and X-inactivation mosaics. J Embryol Exp Morphol 35:445-461.
West, J. D., Hodson, B. A., and Keighren, M. A. (1997). Quantitative and spatial information on the composition of chimaeric fetal mouse eyes from single histological sections. Develop Growth Differ 39, 305-317.