Merge pull request #99 from NIEHS/0.8.1 #76
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # also derived from https://github.com/we-cli/coverage-badge-action | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: test-coverage-local | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr, any::DT, any::htmltools | |
| needs: coverage | |
| - name: Cache C++ and R dependencies | |
| uses: actions/cache@v2 | |
| with: | |
| path: | | |
| ~/.cache/R | |
| ~/.local/share/R | |
| key: dependencies-${{ runner.os }}-${{ hashFiles('**/DESCRIPTION') }} | |
| restore-keys: | | |
| dependencies-${{ runner.os }}- | |
| - name: Test coverage | |
| run: | | |
| Rscript -e "covpack<-covr::package_coverage(install_path='${{ github.workspace }}/cov', clean=FALSE); \ | |
| covr::report(covpack, file = file.path('${{ github.workspace }}', 'chopin-coverage-report.html')); \ | |
| covd<-covr::coverage_to_list(covpack)$totalcoverage; \ | |
| write.table(covd[length(covd)], file = '${{ github.workspace }}/local_cov.Rout', row.names = F, col.names = F)" | |
| shell: bash | |
| - name: Upload covr report as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: covr-report | |
| path: ${{ github.workspace }}/chopin-coverage-report.html | |
| - name: Upload workspace dump as artifact if the test fails | |
| if: ${{ failure() }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-outputs | |
| path: ${{ github.workspace }}/** | |
| - name: Get Values | |
| id: get-values | |
| shell: bash | |
| run: | | |
| COV=$(cat ${{ github.workspace }}/local_cov.Rout) | |
| echo "coverage=$COV" >> $GITHUB_OUTPUT | |
| - name: Checkout gh-pages | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: gh-pages | |
| - name: Create Badges | |
| shell: bash | |
| run: | | |
| npm i -g badgen-cli | |
| export COV=${{ steps.get-values.outputs.coverage }} | |
| COLOR=$(node -p '+process.env.COV >= 95 ? `green` : `orange`') | |
| mkdir -p badges | |
| badgen -j coverage -s $COV% -c $COLOR > badges/coverage.svg | |
| - name: Deploy Badges | |
| uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_message: "Update badges [skip ci]" | |
| branch: gh-pages | |
| skip_fetch: true | |
| skip_checkout: true | |
| # Without this, will get Error: | |
| # Can't find 'action.yml', 'action.yaml' or 'Dockerfile' under '/home/runner/work/coverage-badge-action/coverage-badge-action/action.yml'. | |
| # Did you forget to run actions/checkout before running your local action? | |
| - name: Checkout Back | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.ref }} |