Merge pull request #582 from ylep/fix_default_batch_config

@ylep. Thanks, this brings makes the batch script defaults the same as the stand alone software.
rordenlab · Feb 22, 2022 · 002ebcd · 002ebcd
2 parents 23d0875 + 8430419
commit 002ebcd
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Showing 4 changed files with 8 additions and 8 deletions.
diff --git a/BATCH.md b/BATCH.md
@@ -10,9 +10,9 @@ The configuration file should be in yaml format as shown in example `batch_confi
 ```yaml
 Options:
   isGz:             false
-  isFlipY:          false
+  isFlipY:          true
   isVerbose:        false
-  isCreateBIDS:     false
+  isCreateBIDS:     true
   isOnlySingleFile: false
 Files:
     -

diff --git a/batch_config.yml b/batch_config.yml
@@ -1,8 +1,8 @@
 Options:
   isGz:             false
-  isFlipY:          false
+  isFlipY:          true
   isVerbose:        false
-  isCreateBIDS:     false
+  isCreateBIDS:     true
   isOnlySingleFile: false
 
 Files:

diff --git a/console/main_console_batch.cpp b/console/main_console_batch.cpp
@@ -49,9 +49,9 @@ void showHelp(const char * argv[]) {
 	printf("### START YAML FILE ###\n");
 	printf("Options:\n");
 	printf("   isGz:             false\n");
-	printf("   isFlipY:          false\n");
+	printf("   isFlipY:          true\n");
 	printf("   isVerbose:        false\n");
-	printf("   isCreateBIDS:     false\n");
+	printf("   isCreateBIDS:     true\n");
 	printf("   isOnlySingleFile: false\n");
 	printf("Files:\n");
 	printf("   -\n");

diff --git a/docs/source/dcm2niibatch.rst b/docs/source/dcm2niibatch.rst
@@ -41,9 +41,9 @@ The configuration file should be in yaml format as shown in example *batch_confi
 
     Options:
       isGz:             false
-      isFlipY:          false
+      isFlipY:          true
       isVerbose:        false
-      isCreateBIDS:     false
+      isCreateBIDS:     true
       isOnlySingleFile: false
     Files:
         -