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Remove confusing text from help info for calc_kinship()
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kbroman committed Oct 25, 2023
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4 changes: 2 additions & 2 deletions DESCRIPTION
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Package: qtl2
Version: 0.33-1
Date: 2023-08-24
Version: 0.33-2
Date: 2023-10-25
Title: Quantitative Trait Locus Mapping in Experimental Crosses
Description: Provides a set of tools to perform quantitative
trait locus (QTL) analysis in experimental crosses. It is a
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2 changes: 1 addition & 1 deletion NEWS.md
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## qtl2 0.33-1 (2023-08-24)
## qtl2 0.33-2 (2023-10-25)

### Major changes

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7 changes: 2 additions & 5 deletions R/calc_kinship.R
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#' per chromosome.
#'
#' @details If `use_allele_probs=TRUE` (the default), we first
#' convert the genotype probabilities are converted to allele
#' probabilities (using [genoprob_to_alleleprob()]). This is
#' recommended, as then the result is twice the empirical kinship
#' coefficient (e.g., the expected value for an intercross is 1/2;
#' using genotype probabilities, the expected value is 3/8).
#' convert the genotype probabilities to allele
#' probabilities (using [genoprob_to_alleleprob()]).
#'
#' We then calculate
#' \eqn{\sum_{kl}(p_{ikl} p_{jkl})}{sum_kl (p_ikl p_jkl)}
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7 changes: 2 additions & 5 deletions man/calc_kinship.Rd

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