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Adapter sequences

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Ryan Wick edited this page Jul 1, 2018 · 2 revisions

Nanopore ligation adapters (Badread's default):

--start_adapter_seq AATGTACTTCGTTCAGTTACGTATTGCT
--end_adapter_seq GCAATACGTAACTGAACGAAGT

Barcoded Nanopore ligation adapters:

--start_adapter_seq AATGTACTTCGTTCAGTTACGTATTGCTAAGGTTAACACAAAGACACCGACAACTTTCTTCAGCACCT
--end_adapter_seq AGGTGCTGAAGAAAGTTGTCGGTGTCTTTGTGTTAACCTTAGCAATACGTAACTGAACGAAGT

Nanopore rapid adapter:

--start_adapter_seq GTTTTCGCATTTATCGTGAAACGCTTTCGCGTTTTTCGTGCGCCGCTTCA
--end_adapter_seq ""

Barcoded Nanopore rapid adapter:

--start_adapter_seq AATGTACTTCGTTCAGTTACGGCTTGGGTGTTTAACCAAGAAAGTTGTCGGTGTCTTTGTGGTTTTCGCATTTATCGTGAAACGCTTTCGCGTTTTTCGTGCGCCGCTTCA
--end_adapter_seq ""
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