Bugfixes for new Pandas version

saeyslab · Sep 5, 2023 · 447d625 · 447d625
1 parent 25a4300
commit 447d625
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/FlowSOM/main.py b/src/FlowSOM/main.py
@@ -585,7 +585,7 @@ def get_cluster_percentages_positive(fsom, cutoffs, cols_used=False, pretty_coln
     perc_pos = np.empty((len(clusters), len(channels)))
     perc_pos.fill(np.NaN)
     for i, cluster in enumerate(clusters):
-        data_per_cluster = fsom.get_cell_data().to_df().loc[cl_per_cell == cluster, channels]
+        data_per_cluster = fsom.get_cell_data().to_df().loc[cl_per_cell == cluster, list(channels.keys())]
         if data_per_cluster.shape[0] != 0:
             for j, column in enumerate(data_per_cluster.columns):
                 cutoff = cutoffs[channels[column]]
@@ -626,7 +626,7 @@ def get_metacluster_percentages_positive(fsom, cutoffs, cols_used=False, pretty_
     perc_pos = np.empty((len(metaclusters), len(channels)))
     perc_pos.fill(np.NaN)
     for i, cluster in enumerate(metaclusters):
-        data_per_metacluster = fsom.get_cell_data().to_df().loc[mcl_per_cell == cluster, channels]
+        data_per_metacluster = fsom.get_cell_data().to_df().loc[mcl_per_cell == cluster, list(channels.keys())]
         if data_per_metacluster.shape[0] != 0:
             for j, column in enumerate(data_per_metacluster.columns):
                 cutoff = cutoffs[channels[column]]