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Clean up installation #5

Clean up installation

Clean up installation #5

Triggered via pull request August 28, 2024 14:55
@csangaracsangara
synchronize #290
install
Status Failure
Total duration 1h 37m 17s
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check-standard.yaml

on: pull_request
Matrix: check-standard
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26 errors and 32 warnings
ubuntu-latest (oldrel-1)
Process completed with exit code 1.
macos-latest (release)
cannot read from connection
macos-latest (release)
there is no package called ‘DiagrammeRsvg’
macos-latest (release)
trying to use CRAN without setting a mirror
macos-latest (release)
Can't select columns that don't exist.
macos-latest (release)
there is no package called ‘nsga2R’
windows-latest (release)
The total size of the 19 globals exported for future expression ('FUN()') is 2.81 GiB.. This exceeds the maximum allowed size of 500.00 MiB (option 'future.globals.maxSize'). The three largest globals are 'FUN' (2.54 GiB of class 'function'), 'raw_umi' (272.22 MiB of class 'S4') and 'model_pars_fit' (1.72 MiB of class 'list')
windows-latest (release)
there is no package called 'DiagrammeRsvg'
windows-latest (release)
trying to use CRAN without setting a mirror
windows-latest (release)
Can't select columns that don't exist.
windows-latest (release)
there is no package called 'nsga2R'
windows-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
there is no package called ‘DiagrammeRsvg’
ubuntu-latest (release)
trying to use CRAN without setting a mirror
ubuntu-latest (release)
Can't select columns that don't exist.
ubuntu-latest (release)
there is no package called ‘nsga2R’
ubuntu-latest (devel)
The total size of the 19 globals exported for future expression (‘FUN()’) is 2.87 GiB.. This exceeds the maximum allowed size of 500.00 MiB (option 'future.globals.maxSize'). The three largest globals are ‘FUN’ (2.55 GiB of class ‘function’), ‘raw_umi’ (272.22 MiB of class ‘S4’) and ‘as.matrix’ (34.70 MiB of class ‘function’)
ubuntu-latest (devel)
there is no package called ‘DiagrammeRsvg’
ubuntu-latest (devel)
trying to use CRAN without setting a mirror
ubuntu-latest (devel)
Can't select columns that don't exist.
ubuntu-latest (devel)
there is no package called ‘nsga2R’
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
macos-latest (release)
'::' or ':::' imports not declared from:
macos-latest (release)
get_expressed_genes:
macos-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
macos-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
macos-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
macos-latest (release)
LazyData DB of 5.8 MB without LazyDataCompression set
macos-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
macos-latest (release)
Directory 'inst/doc' does not exist.
windows-latest (release)
'::' or ':::' imports not declared from:
windows-latest (release)
get_expressed_genes:
windows-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
windows-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
windows-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
windows-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
windows-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
windows-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (release)
'::' or ':::' imports not declared from:
ubuntu-latest (release)
get_expressed_genes:
ubuntu-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
ubuntu-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (devel)
'::' or ':::' imports not declared from:
ubuntu-latest (devel)
get_expressed_genes:
ubuntu-latest (devel)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (devel)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (devel)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (devel)
LazyData DB of 5.5 MB without LazyDataCompression set
ubuntu-latest (devel)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (devel)
Directory 'inst/doc' does not exist.