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Change prioritization table and mushroom plot defaults #6

Change prioritization table and mushroom plot defaults

Change prioritization table and mushroom plot defaults #6

Triggered via pull request August 29, 2024 09:23
@csangaracsangara
synchronize #300
issue-297
Status Failure
Total duration 1h 34m 40s
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check-standard.yaml

on: pull_request
Matrix: check-standard
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41 errors and 32 warnings
ubuntu-latest (oldrel-1)
Process completed with exit code 1.
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot open the connection to 'https://zenodo.org/record/7074291/files/lr_network_human_21122021.rds'
macos-latest (release)
cannot open the connection to 'https://zenodo.org/record/3260758/files/hnscc_expression.rds'
macos-latest (release)
there is no package called ‘DiagrammeRsvg’
macos-latest (release)
trying to use CRAN without setting a mirror
macos-latest (release)
cannot read from connection
macos-latest (release)
there is no package called ‘nsga2R’
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
there is no package called 'DiagrammeRsvg'
windows-latest (release)
trying to use CRAN without setting a mirror
windows-latest (release)
cannot read from connection
windows-latest (release)
there is no package called 'nsga2R'
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
there is no package called ‘DiagrammeRsvg’
ubuntu-latest (release)
trying to use CRAN without setting a mirror
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
there is no package called ‘nsga2R’
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
trying to use CRAN without setting a mirror
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
there is no package called ‘nsga2R’
ubuntu-latest (devel)
cannot read from connection
macos-latest (release)
'::' or ':::' imports not declared from:
macos-latest (release)
get_expressed_genes:
macos-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
macos-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
macos-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
macos-latest (release)
LazyData DB of 5.8 MB without LazyDataCompression set
macos-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
macos-latest (release)
Directory 'inst/doc' does not exist.
windows-latest (release)
'::' or ':::' imports not declared from:
windows-latest (release)
get_expressed_genes:
windows-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
windows-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
windows-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
windows-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
windows-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
windows-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (release)
'::' or ':::' imports not declared from:
ubuntu-latest (release)
get_expressed_genes:
ubuntu-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
ubuntu-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (devel)
'::' or ':::' imports not declared from:
ubuntu-latest (devel)
get_expressed_genes:
ubuntu-latest (devel)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (devel)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (devel)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (devel)
LazyData DB of 5.5 MB without LazyDataCompression set
ubuntu-latest (devel)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (devel)
Directory 'inst/doc' does not exist.