Fix SVLEN examplein VCFv4.3, resolves #84

samtools · May 19, 2015 · 73482c0 · 73482c0
1 parent 672b512
commit 73482c0
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/VCFv4.3.tex b/VCFv4.3.tex
@@ -628,7 +628,7 @@ \subsection{Encoding Structural Variants}
 ##FORMAT=<ID=CN,Number=1,Type=Integer,Description="Copy number genotype for imprecise events">
 ##FORMAT=<ID=CNQ,Number=1,Type=Float,Description="Copy number genotype quality for imprecise events">
 #CHROM POS     ID        REF              ALT          QUAL FILTER INFO                                                               FORMAT       NA00001
-1      2827694 rs2376870 CGTGGATGCGGGGAC  C            .    PASS   SVTYPE=DEL;END=2827762;HOMLEN=1;HOMSEQ=G;SVLEN=-68                 GT:GQ        1/1:13.9
+1      2827694 rs2376870 CGTGGATGCGGGGAC  C            .    PASS   SVTYPE=DEL;END=2827708;HOMLEN=1;HOMSEQ=G;SVLEN=-14                 GT:GQ        1/1:13.9
 2       321682 .         T                <DEL>        6    PASS   SVTYPE=DEL;END=321887;SVLEN=-205;CIPOS=-56,20;CIEND=-10,62         GT:GQ        0/1:12
 2     14477084 .         C                <DEL:ME:ALU> 12   PASS   SVTYPE=DEL;END=14477381;SVLEN=-297;CIPOS=-22,18;CIEND=-12,32       GT:GQ        0/1:12
 3      9425916 .         C                <INS:ME:L1>  23   PASS   SVTYPE=INS;END=9425916;SVLEN=6027;CIPOS=-16,22                     GT:GQ        1/1:15