Skip to content

Issues: sanger-pathogens/circlator

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

56 Open 48 Closed
56 Open 48 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

No thread setting
#191 opened Sep 12, 2024 by xubiy
circlator Command Fails with ModuleNotFoundError: No module named 'pkg_resources'
#190 opened Jul 25, 2024 by AymanMkhalifa
Would circulator change the assembly?
#189 opened Jul 19, 2024 by isabelluo
circlator stuck
#188 opened May 21, 2024 by jpinus
1
AMOS installation error
#183 opened Dec 9, 2022 by ChongLC
Should the assembly be a reference genome?
#181 opened Jun 7, 2022 by elcortegano
1
Mitochondrial Fixstart - Control Region as Origin
#180 opened May 23, 2022 by JamesHowie14
error with circlator
#179 opened Feb 15, 2022 by sekhwal
Found canu but couldn't get version. (canu 2.2)
#178 opened Feb 3, 2022 by ppflrs
2
Assembler canu run gets terminated
#177 opened Nov 24, 2021 by Rmmendoza
1
Use Circlator with nanopore reads of ancestral strain
#176 opened Jul 24, 2021 by SamuelGreenrod
Circlator for polished genome
#174 opened Feb 9, 2021 by rthapa1
1
Circlator seems to run forever
#173 opened Feb 4, 2021 by tnn111
2
what's meaning of the original_assembly.fasta and new_assembly.fasta?
#172 opened Jan 21, 2021 by wanjinhu
1
Using spades --isolate option in circlator all
#171 opened Nov 2, 2020 by brettmorg
circlator test fails at merge step
#169 opened Sep 1, 2020 by davidjstudholme
3
no specific circularization record
#167 opened Jun 9, 2020 by zhaoxvwahaha
Should we do polish（racon+pilon） or circlator first
#166 opened Jun 9, 2020 by zhaoxvwahaha
Invalid kmer coverage histogram
#165 opened May 22, 2020 by s4251484
1
Paired-end reads
#164 opened May 8, 2020 by DarrenObbard
fixstart stringency
#163 opened Apr 25, 2020 by rjsorr
1
Didn't find canu in path. Looked for:canu
#162 opened Mar 25, 2020 by jellila
3
circlator failed to detect Canu 'suggestCircular=yes' contigs
#161 opened Mar 13, 2020 by bitcometz
2
If these two matches are the same, then the second longest match is used.
#160 opened Mar 11, 2020 by bitcometz
circlator and amos conflict with python distribution
#159 opened Feb 20, 2020 by Ram-Nagar
ProTip! What’s not been updated in a month: updated:<2024-08-23.